RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1120060" and tax_phylum = "Atribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Atribacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120060 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29468178 29468178 PRJNA1120060_P_NODE_1749030_length_283_cov_1.414286_g1731022_i0 PRJNA1120060 1749030 283 1.414286 4.00242938 Thermatribacter velox 3039681 Bacteria Bacteria 46.2 0.00148   NR WP_369019009.1 3039681 g1731022 i0 36.3 1.886925795053 91 51 92.2 3 261 1 41 128 WP_369019009.1 ribonuclease HI family protein [Thermatribacter velox] diamond 534 46.2 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Thermatribacteraceae Thermatribacter Thermatribacter velox
30605807 30605807 PRJNA1120060_P_NODE_2092453_length_269_cov_1.770408_g2074413_i0 PRJNA1120060 2092453 269 1.770408 4.76239752 Candidatus Atribacteria bacterium 2053509 Bacteria Bacteria 43.1 0.0348   NR MBP8933483.1 2053509 g2074413 i0 34.3 0.747211895910781 67 33 74.7 2 266 66 47 102 MBP8933483.1 Nif3-like dinuclear metal center hexameric protein [Candidatus Atribacteria bacterium] diamond 201 43.1 1 Bacteria   Pseudomonadati Atribacterota Atribacteria       Candidatus Atribacteria bacterium
32536006 32536006 PRJNA1120060_P_NODE_3548539_length_203_cov_4.153846_g3530412_i0 PRJNA1120060 3548539 203 4.153846 8.43230738 Candidatus Atribacteria bacterium 2053509 Bacteria Bacteria 46.2 6.71e-4   NR MDK2896542.1 2053509 g3530412 i0 38.3 1.75862068965517 60 37 88.7 0 192 13 56 115 MDK2896542.1 ribonuclease [Candidatus Atribacteria bacterium] diamond 357 46.2 1 Bacteria   Pseudomonadati Atribacterota Atribacteria       Candidatus Atribacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;