RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1118794" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1118794 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5333664 5333664 PRJNA1118794_P_NODE_33665_length_283_cov_1.280952_g32915_i0 PRJNA1118794 33665 283 1.280952 3.62509416 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 150 6.4e-40   NR HEX2095505.1 3047548 g32915 i0 73.4 9.96466431095406 94 25 99.6 0 283 2 524 617 HEX2095505.1 aminomethyl-transferring glycine dehydrogenase [Longimicrobiaceae bacterium] diamond 2820 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
12984385 12984385 PRJNA1118794_P_NODE_27551_length_302_cov_1.454148_g26801_i0 PRJNA1118794 27551 302 1.454148 4.39152696 FCB group 1783270 Bacteria Bacteria 149 5.36e-41   NR HEY9229717.1 2026741 g26801 i0 66 10.9668874172185 100 34 99.3 0 301 2 129 228 HEY9229717.1 NADP-dependent isocitrate dehydrogenase [Gemmatimonadaceae bacterium] diamond 3312 149 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
21907306 21907306 PRJNA1118794_P_NODE_1678_length_1130_cov_6.990539_g1180_i0 PRJNA1118794 1678 1130 6.990539 78.9930907 Longimicrobium 1804994 Bacteria Bacteria 276 9.81e-85   NR HVG45248.1 2029185 g1180 i0 50.1 9.1646017699115 341 148 90.5 8 86 1108 34 352 HVG45248.1 S8 family peptidase [Longimicrobium sp.] diamond 10356 278 0.992805755395683 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28426191 28426191 PRJNA1118794_P_NODE_19706_length_340_cov_2.003745_g18956_i0 PRJNA1118794 19706 340 2.003745 6.812733 Longimicrobium sp. 2029185 Bacteria Bacteria 96.3 1.78e-21   NR HEX2210215.1 2029185 g18956 i0 47.3 0.988235294117647 112 58 97.9 1 7 339 135 246 HEX2210215.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 336 96.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29499504 29499504 PRJNA1118794_P_NODE_28330_length_299_cov_1.362832_g27580_i0 PRJNA1118794 28330 299 1.362832 4.07486768 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 75.1 1.8e-13   NR HKH91170.1 2026741 g27580 i0 56.6 0.762541806020067 76 33 76.3 0 298 71 232 307 HKH91170.1 DUF2382 domain-containing protein [Gemmatimonadaceae bacterium] diamond 228 75.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29688684 29688684 PRJNA1118794_P_NODE_4350_length_682_cov_2.118227_g3635_i0 PRJNA1118794 4350 682 2.118227 14.44630814 Gemmatirosa sp. 2510638 Bacteria Bacteria 72 9.74e-11   NR HEY0776568.1 2510638 g3635 i0 46.7 0.470674486803519 107 53 46.2 2 680 366 224 328 HEY0776568.1 YsnF/AvaK domain-containing protein [Gemmatirosa sp.] diamond 321 72 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;