RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1115053 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26719449 26719449 PRJNA1115053_S_NODE_51061_length_334_cov_2.903780_g49244_i0 PRJNA1115053 51061 334 2.90378 9.6986252 Spirochaetia bacterium 2053615 Bacteria Bacteria 119 5.829999999999999e-31   NR NBK26405.1 2053615 g49244 i0 76.4 0.646706586826347 72 17 64.7 0 218 3 136 207 NBK26405.1 hypothetical protein [Spirochaetia bacterium] diamond 216 119 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
29806216 29806216 PRJNA1115053_S_NODE_238411_length_179_cov_2.117647_g236594_i0 PRJNA1115053 238411 179 2.117647 3.79058813 root 1 Root_unresolved Root_unresolved 46.2 1.5e-4   NR WP_085169531.1 159 g236594 i0 56.4 3.92178770949721 39 17 65.4 0 117 1 9 47 WP_085169531.1 hypothetical protein [Brachyspira hyodysenteriae] diamond 702 46.6 0.991416309012876 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae
30130837 30130837 PRJNA1115053_S_NODE_251712_length_175_cov_1.454545_g249895_i0 PRJNA1115053 251712 175 1.454545 2.54545375 Spirochaetaceae bacterium 1898206 Bacteria Bacteria 113 4.709999999999999e-31   NR MBQ3024078.1 1898206 g249895 i0 90.9 2.79428571428571 55 5 94.3 0 173 9 36 90 MBQ3024078.1 type II toxin-antitoxin system YafQ family toxin [Spirochaetaceae bacterium] diamond 489 113 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium
30225922 30225922 PRJNA1115053_S_NODE_117052_length_243_cov_2.220000_g115235_i0 PRJNA1115053 117052 243 2.22 5.3946 Treponema sp. 166 Bacteria Bacteria 143 4.24e-39   NR MBS7265401.1 166 g115235 i0 97.3 1.80246913580247 73 2 90.1 0 1 219 153 225 MBS7265401.1 HD domain-containing protein [Treponema sp.] diamond 438 143 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
31702548 31702548 PRJNA1115053_S_NODE_268477_length_170_cov_1.251969_g266660_i0 PRJNA1115053 268477 170 1.251969 2.1283473 Treponema 157 Bacteria Bacteria 89 2.84e-19   NR MBQ1175357.1 166 g266660 i0 97.7 4.55294117647059 43 1 75.9 0 2 130 226 268 MBQ1175357.1 FprA family A-type flavoprotein [Treponema sp.] diamond 774 89 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32817637 32817637 PRJNA1115053_S_NODE_245980_length_177_cov_1.074627_g244163_i0 PRJNA1115053 245980 177 1.074627 1.90208979 Treponema sp. 166 Bacteria Bacteria 67.4 1.48e-12   NR MBQ5906919.1 166 g244163 i0 100 0.525423728813559 31 0 52.5 0 85 177 1 31 MBQ5906919.1 helix-turn-helix transcriptional regulator [Treponema sp.] diamond 93 67.4 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;