RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1115053 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29310044 29310044 PRJNA1115053_S_NODE_17189_length_484_cov_1.804989_g15403_i0 PRJNA1115053 17189 484 1.804989 8.73614676 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 55.8 1.26e-5   NR XP_006826086.1 10224 g15403 i0 44.4 0.390495867768595 63 35 39 0 192 380 1098 1160 XP_006826086.1 PREDICTED: uncharacterized protein LOC102808992 [Saccoglossus kowalevskii] diamond 189 55.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
29404838 29404838 PRJNA1115053_S_NODE_194449_length_196_cov_2.052288_g192632_i0 PRJNA1115053 194449 196 2.052288 4.02248448 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 54.3 1.71e-6   NR XP_006826086.1 10224 g192632 i0 56.4 0.596938775510204 39 17 59.7 0 193 77 1153 1191 XP_006826086.1 PREDICTED: uncharacterized protein LOC102808992 [Saccoglossus kowalevskii] diamond 117 54.3 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
31141895 31141895 PRJNA1115053_S_NODE_50935_length_334_cov_4.817869_g49118_i0 PRJNA1115053 50935 334 4.817869 16.09168246 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 68.2 1.29e-10   NR XP_006825658.1 10224 g49118 i0 51.7 9.29640718562874 60 29 53.9 0 182 3 87 146 XP_006825658.1 PREDICTED: uncharacterized protein LOC102806397 [Saccoglossus kowalevskii] diamond 3105 68.6 0.994169096209913 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
32439464 32439464 PRJNA1115053_S_NODE_170419_length_208_cov_1.163636_g168602_i0 PRJNA1115053 170419 208 1.163636 2.42036288 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 50.8 3.3e-5   NR XP_006820893.1 10224 g168602 i0 51 1.47115384615385 51 24 72.1 1 183 34 129 179 XP_006820893.1 PREDICTED: uncharacterized protein LOC102808110 [Saccoglossus kowalevskii] diamond 306 50.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;