RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1115053 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28836414 28836414 PRJNA1115053_S_NODE_53128_length_329_cov_3.919580_g51311_i0 PRJNA1115053 53128 329 3.91958 12.8954182 Fibrobacter sp. 35828 Bacteria Bacteria 44.7 0.0197   NR MCQ2106775.1 35828 g51311 i0 35.4 0.720364741641337 79 48 69.3 1 68 295 54 132 MCQ2106775.1 hypothetical protein [Fibrobacter sp.] diamond 237 44.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
30889557 30889557 PRJNA1115053_S_NODE_220474_length_186_cov_1.006993_g218657_i0 PRJNA1115053 220474 186 1.006993 1.87300698 Fibrobacterota bacterium 2052160 Bacteria Bacteria 42 0.0321   NR MEN9353297.1 2052160 g218657 i0 40 0.645161290322581 40 24 64.5 0 157 38 223 262 MEN9353297.1 hypothetical protein [Fibrobacterota bacterium] diamond 120 42 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
31639202 31639202 PRJNA1115053_S_NODE_157116_length_215_cov_1.866279_g155299_i0 PRJNA1115053 157116 215 1.866279 4.01249985 Fibrobacter 832 Bacteria Bacteria 105 1.64e-26   NR WP_139261091.1 1896215 g155299 i0 100 1.42325581395349 51 0 71.2 0 61 213 1 51 WP_139261091.1 type III toxin-antitoxin system TenpIN family toxin [Fibrobacter sp. UWOV1] diamond 306 105 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWOV1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;