RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28678778 28678778 PRJNA1115053_S_NODE_62947_length_309_cov_3.845865_g61130_i0 PRJNA1115053 62947 309 3.845865 11.88372285 Cymbomonas tetramitiformis 36881 Plants Plants 61.2 2.5e-8   NR KAK3244124.1 36881 g61130 i0 40.2 1.46601941747573 82 22 79.6 2 297 52 365 419 KAK3244124.1 hypothetical protein CYMTET_46253 [Cymbomonas tetramitiformis] diamond 453 61.2 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
30659362 30659362 PRJNA1115053_S_NODE_110113_length_249_cov_2.776699_g108296_i0 PRJNA1115053 110113 249 2.776699 6.91398051 Eukaryota 2759 Plants Plants 110 3.81e-29   NR KAJ9525063.1 44745 g108296 i0 67.1 3.95180722891566 82 27 98.8 0 247 2 34 115 KAJ9525063.1 hypothetical protein QJQ45_017372 [Haematococcus lacustris] diamond 984 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;