RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26719443 26719443 PRJNA1115053_S_NODE_266401_length_170_cov_4.629921_g264584_i0 PRJNA1115053 266401 170 4.629921 7.8708657 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 41.6 0.0356   NR HLK58045.1 2739509 g264584 i0 43.2 0.776470588235294 44 21 70.6 1 9 128 213 256 HLK58045.1 stage II sporulation protein M [Chthonomonadaceae bacterium] diamond 132 41.6 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
32091174 32091174 PRJNA1115053_S_NODE_289278_length_164_cov_1.495868_g287461_i0 PRJNA1115053 289278 164 1.495868 2.45322352 Armatimonadota bacterium 2033014 Bacteria Bacteria 57 1.17e-7   NR MEY4914705.1 2033014 g287461 i0 61.5 1.42682926829268 39 15 71.3 0 150 34 338 376 MEY4914705.1 hypothetical protein [Armatimonadota bacterium] diamond 234 57 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;