RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26941336 26941336 PRJNA1115053_S_NODE_147082_length_221_cov_2.157303_g145265_i0 PRJNA1115053 147082 221 2.157303 4.76763963 uncultured Deinococcus sp. 158789 Bacteria Bacteria 42.4 0.0202   NR WP_295820926.1 158789 g145265 i0 38.8 0.665158371040724 49 30 66.5 0 56 202 33 81 WP_295820926.1 GNAT family N-acetyltransferase [uncultured Deinococcus sp.] diamond 147 42.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus uncultured Deinococcus sp.
29404846 29404846 PRJNA1115053_S_NODE_319209_length_156_cov_2.247788_g317392_i0 PRJNA1115053 319209 156 2.247788 3.50654928 Trueperaceae bacterium 2026798 Bacteria Bacteria 39.7 0.0477   NR MEX2535624.1 2026798 g317392 i0 52.9 0.653846153846154 34 15 65.4 1 135 34 2 34 MEX2535624.1 hypothetical protein [Trueperaceae bacterium] diamond 102 39.7 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;