RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 4 ✖

bioproject 1

  • PRJNA1115053 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29089148 29089148 PRJNA1115053_S_NODE_118868_length_242_cov_0.964824_g117051_i0 PRJNA1115053 118868 242 0.964824 2.33487408 Methanothrix sp. 90426 Archaea Archaea 47.4 7.19e-4   NR MCK9566210.1 90426 g117051 i0 45.9 0.45867768595041303 37 20 45.9 0 50 160 20 56 MCK9566210.1 hypothetical protein [Methanothrix sp.] diamond 111 47.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
29751891 29751891 PRJNA1115053_S_NODE_350231_length_151_cov_1.333333_g348414_i0 PRJNA1115053 350231 151 1.333333 2.01333283 Halorubrum vacuolatum 63740 Archaea Archaea 41.6 0.028   NR WP_143420458.1 63740 g348414 i0 58.6 0.576158940397351 29 12 57.6 0 121 35 1372 1400 WP_143420458.1 hypothetical protein [Halorubrum vacuolatum] diamond 87 41.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum vacuolatum
29910196 29910196 PRJNA1115053_S_NODE_159511_length_214_cov_1.122807_g157694_i0 PRJNA1115053 159511 214 1.1228070000000001 2.40280698 Methanolinea mesophila 547055 Archaea Archaea 42 0.0477   NR WP_209673321.1 547055 g157694 i0 42.6 1.23364485981308 54 28 75.7 1 37 198 277 327 WP_209673321.1 aldo/keto reductase [Methanolinea mesophila] diamond 264 42 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanolinea Methanolinea mesophila
32754704 32754704 PRJNA1115053_S_NODE_79920_length_283_cov_1.600000_g78103_i0 PRJNA1115053 79920 283 1.6 4.528 Halorarum halophilum 2743090 Archaea Archaea 45.4 0.00655   NR WP_179170698.1 2743090 g78103 i0 38.6 0.879858657243816 83 46 85.9 3 243 1 229 308 WP_179170698.1 sensor histidine kinase [Halorarum halophilum] diamond 249 45.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorarum Halorarum halophilum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;