RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA1115053 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27225889 27225889 PRJNA1115053_S_NODE_341103_length_152_cov_1.403670_g339286_i0 PRJNA1115053 341103 152 1.40367 2.1335784 Methanobacteriaceae archaeon 2099680 Archaea Archaea 101 2.6e-23   NR NYB25877.1 2099680 g339286 i0 100 1.97368421052632 50 0 98.7 0 2 151 112 161 NYB25877.1 SMC family ATPase [Methanobacteriaceae archaeon] diamond 300 101 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
27731694 27731694 PRJNA1115053_S_NODE_175664_length_205_cov_1.623457_g173847_i0 PRJNA1115053 175664 205 1.623457 3.32808685 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 131 4.01e-36   NR WP_288267474.1 253161 g173847 i0 92.5 0.980487804878049 67 5 98 0 203 3 170 236 WP_288267474.1 DUF169 domain-containing protein, partial [uncultured Methanobrevibacter sp.] diamond 201 131 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
28868076 28868076 PRJNA1115053_S_NODE_77568_length_286_cov_2.172840_g75751_i0 PRJNA1115053 77568 286 2.17284 6.2143224 Methanobrevibacter sp. 66852 Archaea Archaea 60.5 3.56e-8   NR WP_330008794.1 66852 g75751 i0 100 0.713286713286713 34 0 35.7 0 3 104 725 758 WP_330008794.1 ABC transporter permease [Methanobrevibacter sp.] diamond 204 60.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31458647 31458647 PRJNA1115053_S_NODE_90056_length_270_cov_2.145374_g88239_i0 PRJNA1115053 90056 270 2.145374 5.7925098 Methanobacterium formicicum 2162 Archaea Archaea 43.5 0.0251   NR WP_060537930.1 2162 g88239 i0 35.3 0.566666666666667 51 33 56.7 0 116 268 74 124 WP_060537930.1 glycosyltransferase family 2 protein [Methanobacterium formicicum] diamond 153 43.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;