RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1115053" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1115053 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27952476 27952476 PRJNA1115053_S_NODE_305385_length_160_cov_1.230769_g303568_i0 PRJNA1115053 305385 160 1.230769 1.9692304 Trypanosoma congolense IL3 5692 Euglenozoa other_Eukaryota 46.2 7.29e-4   NR CCD14949.1 1068625 g303568 i0 44.1 3.975 59 25 95.6 1 7 159 398 456 CCD14949.1 unnamed protein product [Trypanosoma congolense IL3000] diamond 636 46.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma congolense
31679736 31679736 PRJNA1115053_S_NODE_356057_length_150_cov_1.794393_g354240_i0 PRJNA1115053 356057 150 1.794393 2.6915895 Bodo saltans 75058 Euglenozoa other_Eukaryota 78.2 4.7e-16   NR CUG10349.1 75058 g354240 i0 79.2 4.88 48 10 96 0 6 149 162 209 CUG10349.1 40S ribosomal protein S8, putative [Bodo saltans] diamond 732 78.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
32439470 32439470 PRJNA1115053_S_NODE_213799_length_188_cov_1.827586_g211982_i0 PRJNA1115053 213799 188 1.827586 3.43586168 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 56.2 3.1e-7   NR XP_044547467.1 51637 g211982 i0 58.9 1.6595744680851101 56 22 87.8 1 166 2 553 608 XP_044547467.1 uncharacterized protein C9374_006172 [Naegleria lovaniensis] diamond 312 56.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;