RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1113956" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1113956 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28142043 28142043 PRJNA1113956_P_NODE_19065_length_259_cov_0.935484_g18725_i0 PRJNA1113956 19065 259 0.935484 2.42290356 Desulfuromonadaceae bacterium 2099677 Bacteria Bacteria 43.5 0.0227   NR HEY4743874.1 2099677 g18725 i0 37.5 1.01930501930502 88 43 88 2 254 27 13 100 HEY4743874.1 hypothetical protein [Desulfuromonadaceae bacterium] diamond 264 43.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae   Desulfuromonadaceae bacterium
32367125 32367125 PRJNA1113956_P_NODE_8039_length_527_cov_3.361233_g7704_i0 PRJNA1113956 8039 527 3.361233 17.71369791 Pseudomonadati 3379134 Bacteria Bacteria 101 9.49e-24   NR WP_038057828.1 161156 g7704 i0 48 1.1100569259962 98 51 55.8 0 231 524 6 103 WP_038057828.1 cyclic pyranopterin monophosphate synthase MoaC [Thermodesulfobacterium hydrogeniphilum] diamond 585 101 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium hydrogeniphilum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;