RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1113956" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1113956 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27668355 27668355 PRJNA1113956_P_NODE_22004_length_243_cov_1.358824_g21664_i0 PRJNA1113956 22004 243 1.358824 3.30194232 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 48.9 1.7e-4   NR KAJ9458201.1 91374 g21664 i0 36.4 0.814814814814815 66 42 81.5 0 27 224 112 177 KAJ9458201.1 Ras-like GTP-binding protein YPT1 [Diplonema papillatum] diamond 198 48.9 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
28426136 28426136 PRJNA1113956_P_NODE_666_length_1988_cov_9.525326_g605_i0 PRJNA1113956 666 1988 9.525326 189.36348088 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 225 1.01e-60   NR KAJ9461372.1 91374 g605 i0 29.7 0.834507042253521 553 325 75.9 15 1584 76 91 629 KAJ9461372.1 Proline dehydrogenase 1 [Diplonema papillatum] diamond 1659 225 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;