RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1113956" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1113956 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28678744 28678744 PRJNA1113956_P_NODE_4587_length_810_cov_9.009498_g4295_i0 PRJNA1113956 4587 810 9.009498 72.9769338 Paramarteilia canceri 2844372 SAR_Eukaryotes SAR_Eukaryotes 62.4 6.71e-8   NR MES1904578.1 2844372 g4295 i0 40.5 1.12592592592593 74 43 27 1 644 426 7 80 MES1904578.1 mediator of RNA polymerase II transcription subunit [Paramarteilia canceri] diamond 912 62.4 1 Eukaryota Sar   Endomyxa Ascetosporea Paramyxida Marteiliidae Paramarteilia Paramarteilia canceri
32186127 32186127 PRJNA1113956_P_NODE_13718_length_339_cov_2.981203_g13378_i0 PRJNA1113956 13718 339 2.981203 10.10627817 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 122 1.75e-31   NR MES1919395.1 126728 g13378 i0 58 0.884955752212389 100 42 88.5 0 37 336 1 100 MES1919395.1 diphthine synthase [Bonamia ostreae] diamond 300 122 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;