RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1113956" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1113956 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30857796 30857796 PRJNA1113956_P_NODE_7754_length_542_cov_2.942431_g7421_i0 PRJNA1113956 7754 542 2.942431 15.94797602 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 134 4.4e-36   NR MFA6379319.1 2035772 g7421 i0 44.4 8.59040590405904 169 85 92.4 5 540 40 16 177 MFA6379319.1 dihydrofolate reductase [Candidatus Omnitrophota bacterium] diamond 4656 134 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31047730 31047730 PRJNA1113956_P_NODE_21435_length_245_cov_0.895349_g21095_i0 PRJNA1113956 21435 245 0.895349 2.19360505 Tepidisphaeraceae bacterium 2876886 Bacteria Bacteria 44.3 0.0104   NR HZZ43426.1 2876886 g21095 i0 34.3 0.820408163265306 67 37 79.6 2 47 241 37 98 HZZ43426.1 hypothetical protein [Tepidisphaeraceae bacterium] diamond 201 44.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae   Tepidisphaeraceae bacterium
31964444 31964444 PRJNA1113956_P_NODE_17378_length_281_cov_1.427885_g17038_i0 PRJNA1113956 17378 281 1.427885 4.01235685 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 52.8 1.79e-5   NR MEM9479008.1 2026799 g17038 i0 31 4.97508896797153 71 49 75.8 0 250 38 648 718 MEM9479008.1 serine/threonine-protein kinase [Verrucomicrobiota bacterium] diamond 1398 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32059443 32059443 PRJNA1113956_P_NODE_21118_length_246_cov_0.890173_g20778_i0 PRJNA1113956 21118 246 0.890173 2.18982558 Planctomycetales bacterium 2053591 Bacteria Bacteria 43.1 0.0225   NR MCA9186281.1 2053591 g20778 i0 34.3 0.817073170731707 67 34 81.7 1 17 217 33 89 MCA9186281.1 CDP-alcohol phosphatidyltransferase family protein [Planctomycetales bacterium] diamond 201 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;