RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1112809" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1112809 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27952366 27952366 PRJNA1112809_P_NODE_193105_length_241_cov_0.916667_g189830_i0 PRJNA1112809 193105 241 0.916667 2.20916747 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 77 3.12e-14   NR PRP84780.1 1890364 g189830 i0 54.5 0.684647302904564 55 25 68.5 0 222 58 589 643 PRP84780.1 hypothetical protein PROFUN_07434 [Planoprotostelium fungivorum] diamond 165 77 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30162389 30162389 PRJNA1112809_P_NODE_107052_length_317_cov_3.282787_g103777_i0 PRJNA1112809 107052 317 3.282787 10.40643479 Heterostelium pallidum 13642 Evosea other_Eukaryota 61.6 3.94e-9   NR YP_209579.1 13642 g103777 i0 48.5 0.643533123028391 68 29 58.7 1 206 21 5 72 YP_209579.1 ribosomal protein L11 [Heterostelium pallidum] diamond 204 61.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
30763099 30763099 PRJNA1112809_P_NODE_190374_length_242_cov_0.911243_g187099_i0 PRJNA1112809 190374 242 0.911243 2.20520806 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 104 7.94e-24   NR PRP83074.1 1890364 g187099 i0 61.7 1.00413223140496 81 30 99.2 1 241 2 3439 3519 PRP83074.1 putative HECT E3 ubiquitin ligase [Planoprotostelium fungivorum] diamond 243 104 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;