RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA1112809" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 12 ✖

bioproject 1

  • PRJNA1112809 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7401197 7401197 PRJNA1112809_P_NODE_186986_length_243_cov_0.905882_g183711_i0 PRJNA1112809 186986 243 0.905882 2.20129326 Natronomonas sp. LN261 2750669 Archaea Archaea 139 1.27e-37   NR WP_181693204.1 2750669 g183711 i0 93.8 0.987654320987654 80 5 98.8 0 2 241 168 247 WP_181693204.1 DUF373 family protein [Natronomonas sp. LN261] diamond 240 139 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
8676413 8676413 PRJNA1112809_P_NODE_123247_length_292_cov_2.328767_g119972_i0 PRJNA1112809 123247 292 2.328767 6.79999964 root 1 Root_unresolved Root_unresolved 73.9 3.7e-14   NR WP_230669085.1 2207 g119972 i0 49.1 6.29794520547945 55 28 56.5 0 7 171 97 151 WP_230669085.1 MULTISPECIES: VOC family protein [Methanosarcina] diamond 1839 73.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina  
11226613 11226613 PRJNA1112809_P_NODE_143949_length_269_cov_2.285714_g140674_i0 PRJNA1112809 143949 269 2.285714 6.14857066 Natronomonas sp. LN261 2750669 Archaea Archaea 169 1.6399999999999998e-47   NR WP_181690950.1 2750669 g140674 i0 96.6 0.992565055762082 89 3 99.3 0 269 3 346 434 WP_181690950.1 DUF2070 family protein [Natronomonas sp. LN261] diamond 267 169 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
16797452 16797452 PRJNA1112809_P_NODE_200554_length_219_cov_5.308219_g197279_i0 PRJNA1112809 200554 219 5.308219 11.62499961 Halopenitus sp. H-Gu1 3242697 Archaea Archaea 52.8 7.77e-6   NR WP_373673496.1 3242697 g197279 i0 68.2 0.602739726027397 44 14 60.3 0 87 218 8 51 WP_373673496.1 hypothetical protein [Halopenitus sp. H-Gu1] diamond 132 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halopenitus Halopenitus sp. H-Gu1
23975650 23975650 PRJNA1112809_P_NODE_174079_length_247_cov_2.959770_g170804_i0 PRJNA1112809 174079 247 2.95977 7.3106319 root 1 Root_unresolved Root_unresolved 58.5 5.16e-8   NR WP_319643401.1 1789227 g170804 i0 52.2 5.48987854251012 69 32 83.8 1 16 222 150 217 WP_319643401.1 thiamine phosphate synthase [Methanovulcanius yangii] diamond 1356 58.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanovulcanius Methanovulcanius yangii
26846654 26846654 PRJNA1112809_P_NODE_60301_length_469_cov_2.234848_g57029_i0 PRJNA1112809 60301 469 2.234848 10.48143712 ANME-2 cluster archaeon 2056317 Archaea Archaea 137 8.59e-37   NR MBA1340684.1 2056317 g57029 i0 44.9 1.98933901918977 156 82 99.8 3 468 1 93 244 MBA1340684.1 hypothetical protein [ANME-2 cluster archaeon] diamond 933 137 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     ANME-2 cluster archaeon
27754241 27754241 PRJNA1112809_P_NODE_104104_length_323_cov_1.660000_g100829_i0 PRJNA1112809 104104 323 1.66 5.3618 root 1 Root_unresolved Root_unresolved 84.3 3.88e-17   NR WP_092902835.1 619731 g100829 i0 55.8 1.44891640866873 77 27 65 2 3 212 177 253 WP_092902835.1 class I SAM-dependent methyltransferase [Halostagnicola kamekurae] diamond 468 84.7 0.995277449822904 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halostagnicola Halostagnicola kamekurae
28583926 28583926 PRJNA1112809_P_NODE_193367_length_241_cov_0.916667_g190092_i0 PRJNA1112809 193367 241 0.916667 2.20916747 Methanomicrobiales archaeon 2184052 Archaea Archaea 67.8 4.16e-11   NR MDD1679250.1 2184052 g190092 i0 51.7 0.746887966804979 60 29 74.7 0 3 182 272 331 MDD1679250.1 trypsin-like peptidase domain-containing protein [Methanomicrobiales archaeon] diamond 180 67.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales     Methanomicrobiales archaeon
28836272 28836272 PRJNA1112809_P_NODE_138628_length_275_cov_1.524752_g135353_i0 PRJNA1112809 138628 275 1.524752 4.193068 Halonotius roseus 2511997 Archaea Archaea 137 1.26e-35   NR WP_142444067.1 2511997 g135353 i0 93.6 0.850909090909091 78 5 85.1 0 42 275 23 100 WP_142444067.1 DNA mismatch repair protein [Halonotius roseus] diamond 234 137 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius roseus
29048681 29048681 PRJNA1112809_P_NODE_127188_length_288_cov_0.916279_g123913_i0 PRJNA1112809 127188 288 0.916279 2.63888352 root 1 Root_unresolved Root_unresolved 48.5 5.46e-4   NR WP_394326080.1 418008 g123913 i0 50 1.33333333333333 44 22 45.8 0 5 136 7 50 WP_394326080.1 YncE family protein [Methanosarcina horonobensis] diamond 384 48.9 0.991820040899796 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina horonobensis
29878497 29878497 PRJNA1112809_P_NODE_196491_length_235_cov_2.098765_g193216_i0 PRJNA1112809 196491 235 2.098765 4.93209775 Halorarius halobius 2962671 Archaea Archaea 42.4 0.0481   NR WP_255149988.1 2962671 g193216 i0 50 0.663829787234043 52 26 66.4 0 217 62 229 280 WP_255149988.1 PKD domain-containing protein [Halorarius halobius] diamond 156 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halorarius Halorarius halobius
30225824 30225824 PRJNA1112809_P_NODE_179972_length_245_cov_2.261628_g176697_i0 PRJNA1112809 179972 245 2.261628 5.5409886 Methanothrix harundinacea 301375 Archaea Archaea 52.4 1.5e-5   NR MCP1393524.1 301375 g176697 i0 37.3 0.820408163265306 67 37 82 1 37 237 190 251 MCP1393524.1 hypothetical protein [Methanothrix harundinacea] diamond 201 52.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix harundinacea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;