RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1111448" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1111448 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27162437 27162437 PRJNA1111448_S_NODE_79702_length_296_cov_2.035874_g78879_i0 PRJNA1111448 79702 296 2.035874 6.02618704 Vannella simplex 197532 Discosea other_Eukaryota 77.4 1.88e-15   NR AUO29161.1 197532 g78879 i0 52.2 0.699324324324324 69 33 69.9 0 87 293 31 99 AUO29161.1 ribosomal protein L16 [Vannella simplex] diamond 207 77.4 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
27920597 27920597 PRJNA1111448_S_NODE_123085_length_249_cov_3.107955_g122262_i0 PRJNA1111448 123085 249 3.107955 7.73880795 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 78.2 2.87e-16   NR XP_004348720.1 1257118 g122262 i0 52 0.903614457831325 75 32 90.4 2 1 225 60 130 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 225 78.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31204826 31204826 PRJNA1111448_S_NODE_105935_length_265_cov_1.604167_g105112_i0 PRJNA1111448 105935 265 1.604167 4.25104255 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 75.5 1.47e-13   NR XP_004334027.1 1257118 g105112 i0 47.4 0.860377358490566 76 37 86 1 264 37 555 627 XP_004334027.1 alphaactinin, putative [Acanthamoeba castellanii str. Neff] diamond 228 75.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;