RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1111448" and tax_phylum = "Candidatus Vogeliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Vogeliibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1111448 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29593708 29593708 PRJNA1111448_S_NODE_132770_length_244_cov_1.350877_g131947_i0 PRJNA1111448 132770 244 1.350877 3.29613988 Candidatus Vogelbacteria bacterium CG1 2053638 Bacteria Bacteria 42.7 0.0378   NR PIR45692.1 1975044 g131947 i0 29.2 0.885245901639344 72 48 84.8 1 22 228 31 102 PIR45692.1 MAG: hypothetical protein COV09_00040 [Candidatus Vogelbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_50_13] diamond 216 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Vogeliibacteriota         Candidatus Vogelbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_50_13

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;