contig_metadata
12 rows where analysis = "diamond", bioproject = "PRJNA1111448" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16325517 | 16325517 | PRJNA1111448_S_NODE_8073_length_630_cov_8.771993_g7322_i0 | PRJNA1111448 | 8073 | 630 | 8.771993 | 55.2635559 | root | 1 | Root_unresolved | Root_unresolved | 414 | 7.69e-131 | NR | WP_306789577.1 | 1280 | g7322 | i0 | 100 | 45.7809523809524 | 209 | 0 | 99.5 | 0 | 629 | 3 | 825 | 1033 | WP_306789577.1 type II CRISPR RNA-guided endonuclease Cas9 [Staphylococcus aureus] | diamond | 28842 | 414 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 26972834 | 26972834 | PRJNA1111448_S_NODE_110102_length_261_cov_1.218085_g109279_i0 | PRJNA1111448 | 110102 | 261 | 1.218085 | 3.17920185 | Aedoeadaptatus coxii | 755172 | Bacteria | Bacteria | 186 | 2.31e-58 | NR | WP_068369379.1 | 755172 | g109279 | i0 | 98.8 | 0.988505747126437 | 86 | 1 | 98.9 | 0 | 259 | 2 | 40 | 125 | WP_068369379.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [Aedoeadaptatus coxii] | diamond | 258 | 186 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Aedoeadaptatus | Aedoeadaptatus coxii | ||
| 27754239 | 27754239 | PRJNA1111448_S_NODE_140324_length_238_cov_2.824242_g139501_i0 | PRJNA1111448 | 140324 | 238 | 2.824242 | 6.72169596 | Dorea | 189330 | Bacteria | Bacteria | 43.1 | 0.0037200000000000002 | NR | RGC52711.1 | 88431 | g139501 | i0 | 42.2 | 1.13445378151261 | 45 | 25 | 56.7 | 1 | 222 | 88 | 31 | 74 | RGC52711.1 hypothetical protein DW690_27965 [Dorea longicatena] | diamond | 270 | 43.1 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Dorea | Dorea longicatena | ||
| 28299495 | 28299495 | PRJNA1111448_S_NODE_94506_length_278_cov_1.126829_g93683_i0 | PRJNA1111448 | 94506 | 278 | 1.126829 | 3.13258462 | Sporolactobacillus shoreicorticis | 1923877 | Bacteria | Bacteria | 43.1 | 0.0422 | NR | WP_253058382.1 | 1923877 | g93683 | i0 | 44.2 | 0.561151079136691 | 52 | 28 | 55 | 1 | 39 | 191 | 77 | 128 | WP_253058382.1 sigma 54-interacting transcriptional regulator [Sporolactobacillus shoreicorticis] | diamond | 156 | 43.1 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Sporolactobacillaceae | Sporolactobacillus | Sporolactobacillus shoreicorticis | ||
| 28804501 | 28804501 | PRJNA1111448_S_NODE_87588_length_286_cov_1.431925_g86765_i0 | PRJNA1111448 | 87588 | 286 | 1.431925 | 4.0953055 | Desulfitobacterium | 36853 | Bacteria | Bacteria | 43.5 | 0.0328 | NR | WP_014792319.1 | 36853 | g86765 | i0 | 34.9 | 0.660839160839161 | 63 | 40 | 65 | 1 | 68 | 253 | 318 | 380 | WP_014792319.1 MULTISPECIES: aldehyde dehydrogenase family protein [Desulfitobacterium] | diamond | 189 | 43.5 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Desulfitobacteriaceae | Desulfitobacterium | |||
| 29183810 | 29183810 | PRJNA1111448_S_NODE_121049_length_251_cov_0.865169_g120226_i0 | PRJNA1111448 | 121049 | 251 | 0.865169 | 2.17157419 | Dialister sp. | 1955814 | Bacteria | Bacteria | 42.7 | 0.0415 | NR | MDU5281008.1 | 1955814 | g120226 | i0 | 34.3 | 0.800796812749004 | 67 | 37 | 80.1 | 1 | 202 | 2 | 456 | 515 | MDU5281008.1 type I DNA topoisomerase [Dialister sp.] | diamond | 201 | 42.7 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Veillonellales | Veillonellaceae | Dialister | Dialister sp. | ||
| 29404686 | 29404686 | PRJNA1111448_S_NODE_137349_length_242_cov_0.911243_g136526_i0 | PRJNA1111448 | 137349 | 242 | 0.911243 | 2.20520806 | Clostridia bacterium | 2044939 | Bacteria | Bacteria | 42.7 | 0.0143 | NR | MBR3018279.1 | 2044939 | g136526 | i0 | 35.8 | 0.830578512396694 | 67 | 40 | 80.6 | 2 | 240 | 46 | 27 | 92 | MBR3018279.1 SDR family oxidoreductase [Clostridia bacterium] | diamond | 201 | 42.7 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Clostridia bacterium | |||||
| 29688496 | 29688496 | PRJNA1111448_S_NODE_129650_length_246_cov_0.890173_g128827_i0 | PRJNA1111448 | 129650 | 246 | 0.890173 | 2.18982558 | Weissella cibaria | 137591 | Bacteria | Bacteria | 42 | 0.0355 | NR | WP_196777313.1 | 137591 | g128827 | i0 | 54.8 | 0.890243902439024 | 73 | 20 | 85.4 | 5 | 225 | 16 | 22 | 84 | WP_196777313.1 hypothetical protein, partial [Weissella cibaria] | diamond | 219 | 42 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Weissella cibaria | ||
| 30004735 | 30004735 | PRJNA1111448_S_NODE_119971_length_251_cov_1.730337_g119148_i0 | PRJNA1111448 | 119971 | 251 | 1.730337 | 4.34314587 | Clostridia bacterium | 2044939 | Bacteria | Bacteria | 129 | 1.06e-32 | NR | MBQ8407404.1 | 2044939 | g119148 | i0 | 89 | 0.872509960159363 | 73 | 8 | 87.3 | 0 | 220 | 2 | 1 | 73 | MBQ8407404.1 ABC transporter ATP-binding protein [Clostridia bacterium] | diamond | 219 | 129 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Clostridia bacterium | |||||
| 30130663 | 30130663 | PRJNA1111448_S_NODE_81632_length_294_cov_0.760181_g80809_i0 | PRJNA1111448 | 81632 | 294 | 0.760181 | 2.23493214 | Streptococcus anginosus | 1328 | Bacteria | Bacteria | 46.6 | 0.0028 | NR | WP_330942626.1 | 1328 | g80809 | i0 | 45.7 | 0.469387755102041 | 46 | 25 | 46.9 | 0 | 293 | 156 | 328 | 373 | WP_330942626.1 hypothetical protein [Streptococcus anginosus] | diamond | 138 | 46.6 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus anginosus | ||
| 31449611 | 31449611 | PRJNA1111448_S_NODE_56296_length_334_cov_6.750958_g55473_i0 | PRJNA1111448 | 56296 | 334 | 6.750958 | 22.54819972 | root | 1 | Root_unresolved | Root_unresolved | 87 | 3.83e-20 | NR | WP_369599335.1 | 1590 | g55473 | i0 | 100 | 77.5958083832335 | 40 | 0 | 35.9 | 0 | 332 | 213 | 20 | 59 | WP_369599335.1 hypothetical protein, partial [Lactiplantibacillus plantarum] | diamond | 25917 | 87 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactiplantibacillus | Lactiplantibacillus plantarum | ||
| 31616422 | 31616422 | PRJNA1111448_S_NODE_34396_length_393_cov_1.203125_g33573_i0 | PRJNA1111448 | 34396 | 393 | 1.203125 | 4.72828125 | Tissierellaceae bacterium | 2562714 | Bacteria | Bacteria | 248 | 7.209999999999998e-82 | NR | HZJ99966.1 | 2562714 | g33573 | i0 | 96.9 | 0.99236641221374 | 130 | 4 | 99.2 | 0 | 392 | 3 | 44 | 173 | HZJ99966.1 hypothetical protein [Tissierellaceae bacterium] | diamond | 390 | 248 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Tissierellaceae | Tissierellaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;