RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1111448" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA1111448 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27352543 27352543 PRJNA1111448_S_NODE_141863_length_232_cov_2.528302_g141040_i0 PRJNA1111448 141863 232 2.528302 5.86566064 Human immunodeficiency virus 1 11676 Viruses Viruses 41.6 0.0384   NR AER38158.1 11676 g141040 i0 31.8 0.568965517241379 44 30 56.9 0 80 211 80 123 AER38158.1 envelope glycoprotein, partial [Human immunodeficiency virus 1] diamond 132 41.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
30090461 30090461 PRJNA1111448_S_NODE_87472_length_286_cov_1.732394_g86649_i0 PRJNA1111448 87472 286 1.732394 4.95464684 Gammaretrovirus 153135 Viruses Viruses 186 3.7e-52   NR NP_057933.2 11801 g86649 i0 97.9 13.951048951049 95 2 99.7 0 285 1 1168 1262 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 3990 186 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30668123 30668123 PRJNA1111448_S_NODE_56753_length_334_cov_0.942529_g55930_i0 PRJNA1111448 56753 334 0.942529 3.14804686 Marsupial endogenous gammaretrovirus 1 3386029 Viruses Viruses 89.7 3.29e-18   NR DBA62707.1 3386029 g55930 i0 46.2 0.817365269461078 91 43 81.7 1 275 3 1 85 DBA62707.1 TPA_asm: Gag [Marsupial endogenous gammaretrovirus 1] diamond 273 89.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 1
30921095 30921095 PRJNA1111448_S_NODE_12034_length_552_cov_3.803758_g11239_i0 PRJNA1111448 12034 552 3.803758 20.99674416 Marsupial endogenous gammaretrovirus 1 3386029 Viruses Viruses 91.7 8.03e-18   NR DBA62707.1 3386029 g11239 i0 45.7 0.5 92 44 50 1 334 59 1 86 DBA62707.1 TPA_asm: Gag [Marsupial endogenous gammaretrovirus 1] diamond 276 91.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;