RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1111448" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1111448 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7871384 7871384 PRJNA1111448_S_NODE_99287_length_272_cov_1.934673_g98464_i0 PRJNA1111448 99287 272 1.934673 5.26231056 Prototheca wickerhamii 3111 Plants Plants 123 3.77e-34   NR KAK2076376.1 3111 g98464 i0 80.3 5.69117647058824 71 14 78.3 0 257 45 52 122 KAK2076376.1 40S ribosomal protein S20 [Prototheca wickerhamii] diamond 1548 123 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
19343218 19343218 PRJNA1111448_S_NODE_110996_length_260_cov_1.235294_g110173_i0 PRJNA1111448 110996 260 1.235294 3.2117644 Chaetomorpha valida 1213231 Plants Plants 132 1.43e-33   NR AIJ27588.1 1213231 g110173 i0 75.3 37.2692307692308 85 20 98.1 1 259 5 263 346 AIJ27588.1 heat shock protein 70 [Chaetomorpha valida] diamond 9690 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Cladophoraceae Chaetomorpha Chaetomorpha valida
30415722 30415722 PRJNA1111448_S_NODE_95993_length_276_cov_1.517241_g95170_i0 PRJNA1111448 95993 276 1.517241 4.18758516 Bryopsis sp. KO-2 3115439 Plants Plants 94 5.78e-20   NR GMH41886.1 3041901 g95170 i0 50.5 11.2717391304348 91 44 98.9 1 4 276 1237 1326 GMH41886.1 hypothetical protein BSKO_09796 [Bryopsis sp. KO-2023] diamond 3111 94 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;