RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1111448" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA1111448 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27121930 27121930 PRJNA1111448_S_NODE_135122_length_243_cov_0.905882_g134299_i0 PRJNA1111448 135122 243 0.905882 2.20129326 Leishmania 5658 Euglenozoa other_Eukaryota 45.1 0.00536   NR XP_010702936.1 5679 g134299 i0 56.3 0.790123456790123 32 14 39.5 0 5 100 304 335 XP_010702936.1 hypothetical protein LPMP_345170 [Leishmania panamensis] diamond 192 45.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania panamensis
27636652 27636652 PRJNA1111448_S_NODE_60484_length_327_cov_0.909449_g59661_i0 PRJNA1111448 60484 327 0.909449 2.97389823 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 73.2 3.23e-13   NR XP_029224128.1 83891 g59661 i0 59.6 1.04587155963303 57 23 52.3 0 18 188 109 165 XP_029224128.1 large subunit ribosomal protein LP0 [Trypanosoma conorhini] diamond 342 73.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
28804497 28804497 PRJNA1111448_S_NODE_119788_length_251_cov_2.162921_g118965_i0 PRJNA1111448 119788 251 2.162921 5.42893171 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 77 3.59e-14   NR XP_044549601.1 51637 g118965 i0 64.2 1.54183266932271 53 19 63.3 0 91 249 1932 1984 XP_044549601.1 uncharacterized protein C9374_003423 [Naegleria lovaniensis] diamond 387 77 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
28931101 28931101 PRJNA1111448_S_NODE_68608_length_313_cov_0.962500_g67785_i0 PRJNA1111448 68608 313 0.9625 3.012625 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 72.4 5.26e-14   NR KAJ9454858.1 91374 g67785 i0 51.6 0.613418530351438 64 31 61.3 0 2 193 35 98 KAJ9454858.1 10 kDa chaperonin [Diplonema papillatum] diamond 192 72.4 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;