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contig_metadata

28 rows where analysis = "diamond", bioproject = "PRJNA1111146" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 28 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111146 · 28 ✖

analysis 1

  • diamond · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26687927 26687927 PRJNA1111146_P_NODE_358761_length_182_cov_0.868217_g357623_i0 PRJNA1111146 358761 182 0.868217 1.58015494 Lynx pardinus 191816 Chordata Chordata 42.4 0.016   NR VFV23952.1 191816 g357623 i0 61.1 1.00549450549451 36 13 57.7 1 12 116 58 93 VFV23952.1 Hypothetical predicted protein, partial [Lynx pardinus] diamond 183 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Lynx Lynx pardinus
27067714 27067714 PRJNA1111146_P_NODE_336922_length_183_cov_0.876923_g335784_i0 PRJNA1111146 336922 183 0.876923 1.60476909 Equus caballus 9796 Chordata Chordata 43.1 0.012   NR XP_070102340.1 9796 g335784 i0 63.9 1.0327868852459 36 13 59 0 179 72 83 118 XP_070102340.1 DNA excision repair protein ERCC-8 isoform X2 [Equus caballus] diamond 189 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
27194110 27194110 PRJNA1111146_P_NODE_200262_length_206_cov_1.490196_g199124_i0 PRJNA1111146 200262 206 1.490196 3.06980376 Canis lupus familiaris 9615 Chordata Chordata 63.2 1.45e-9   NR BAA25253.1 9615 g199124 i0 50 2.6504854368932 58 28 83 1 33 203 911 968 BAA25253.1 unnamed protein product [Canis lupus familiaris] diamond 546 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
27194138 27194138 PRJNA1111146_P_NODE_382102_length_180_cov_0.897638_g380964_i0 PRJNA1111146 382102 180 0.897638 1.6157484 Chinchilla lanigera 34839 Chordata Chordata 85.1 1.58e-17   NR XP_013361742.1 34839 g380964 i0 85.7 0.933333333333333 56 8 93.3 0 178 11 191 246 XP_013361742.1 PREDICTED: collagen alpha-2(I) chain-like [Chinchilla lanigera] diamond 168 85.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Chinchillidae Chinchilla Chinchilla lanigera
27352508 27352508 PRJNA1111146_P_NODE_238583_length_198_cov_2.606897_g237445_i0 PRJNA1111146 238583 198 2.606897 5.16165606 Ovis aries 9940 Chordata Chordata 67 8.81e-12   NR XDA83449.1 9940 g237445 i0 74.4 0.590909090909091 39 10 59.1 0 148 32 41 79 XDA83449.1 hypothetical protein R6Z07_013537 [Ovis aries] diamond 117 67 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
27659478 27659478 PRJNA1111146_P_NODE_206124_length_205_cov_1.473684_g204986_i0 PRJNA1111146 206124 205 1.473684 3.0210522 Ovis 9935 Chordata Chordata 89.7 6.55e-19   NR KAG5207710.1 9940 g204986 i0 67.2 1.9609756097561 67 21 98 1 4 204 2851 2916 KAG5207710.1 hypothetical protein JEQ12_017474 [Ovis aries] diamond 402 89.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
27888934 27888934 PRJNA1111146_P_NODE_202785_length_206_cov_1.104575_g201647_i0 PRJNA1111146 202785 206 1.104575 2.2754245 Phyllostomus discolor 89673 Chordata Chordata 62.4 9.07e-10   NR KAF6072886.1 89673 g201647 i0 56.3 0.699029126213592 48 21 69.9 0 205 62 110 157 KAF6072886.1 hypothetical protein HJG60_010423 [Phyllostomus discolor] diamond 144 62.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
28489043 28489043 PRJNA1111146_P_NODE_390027_length_180_cov_0.881890_g388889_i0 PRJNA1111146 390027 180 0.88189 1.587402 Choloepus didactylus 27675 Chordata Chordata 52.8 4.54e-6   NR XP_037684815.1 27675 g388889 i0 63.6 0.55 33 12 55 0 80 178 306 338 XP_037684815.1 endogenous retrovirus group V member 2 Env polyprotein-like [Choloepus didactylus] diamond 99 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus didactylus
28678581 28678581 PRJNA1111146_P_NODE_315127_length_185_cov_0.863636_g313989_i0 PRJNA1111146 315127 185 0.863636 1.5977266 Acinonyx jubatus 32536 Chordata Chordata 43.9 0.00676   NR XP_026898278.2 32536 g313989 i0 71.4 0.681081081081081 42 9 64.9 2 1 120 150 190 XP_026898278.2 probable G-protein coupled receptor 27 [Acinonyx jubatus] diamond 126 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Acinonyx Acinonyx jubatus
28867851 28867851 PRJNA1111146_P_NODE_357008_length_182_cov_0.875969_g355870_i0 PRJNA1111146 357008 182 0.875969 1.59426358 Nipponia nippon 128390 Chordata Chordata 42 0.0306   NR XP_009473365.1 128390 g355870 i0 69 0.478021978021978 29 6 47.8 1 87 1 1 26 XP_009473365.1 PREDICTED: ribokinase [Nipponia nippon] diamond 87 42 1 Eukaryota Opisthokonta Metazoa Chordata Aves Pelecaniformes Threskiornithidae Nipponia Nipponia nippon
28994430 28994430 PRJNA1111146_P_NODE_11828_length_454_cov_1.329177_g10699_i0 PRJNA1111146 11828 454 1.329177 6.03446358 Staurois parvus 386267 Chordata Chordata 48.1 5.26e-4   NR CAI9547784.1 386267 g10699 i0 54.1 0.244493392070485 37 17 24.4 0 343 453 50 86 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 111 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29373102 29373102 PRJNA1111146_P_NODE_407289_length_179_cov_0.880952_g406151_i0 PRJNA1111146 407289 179 0.880952 1.57690408 Sus scrofa 9823 Chordata Chordata 43.9 0.00625   NR XP_020946894.1 9823 g406151 i0 50 1.75977653631285 50 22 78.8 1 146 6 1 50 XP_020946894.1 collagen alpha-2(I) chain-like [Sus scrofa] diamond 315 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
29531008 29531008 PRJNA1111146_P_NODE_9750_length_496_cov_2.801354_g8629_i0 PRJNA1111146 9750 496 2.801354 13.89471584 Staurois parvus 386267 Chordata Chordata 58.5 1.23e-7   NR CAI9533415.1 386267 g8629 i0 40 2.04435483870968 110 47 55 4 107 379 1 110 CAI9533415.1 unnamed protein product [Staurois parvus] diamond 1014 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29562354 29562354 PRJNA1111146_P_NODE_272430_length_192_cov_1.323741_g271292_i0 PRJNA1111146 272430 192 1.323741 2.54158272 Manis javanica 9974 Chordata Chordata 55.5 5.85e-7   NR KAI5937361.1 9974 g271292 i0 66.7 3.171875 51 13 73.4 2 50 190 178 228 KAI5937361.1 LINE-1 retrotransposable element ORF2 protein [Manis javanica] diamond 609 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
29751671 29751671 PRJNA1111146_P_NODE_313471_length_185_cov_0.863636_g312333_i0 PRJNA1111146 313471 185 0.863636 1.5977266 Suricata suricatta 37032 Chordata Chordata 64.3 4.19e-10   NR XP_029771491.1 37032 g312333 i0 58.3 0.972972972972973 60 24 97.3 1 184 5 71 129 XP_029771491.1 prolyl 4-hydroxylase subunit alpha-3 [Suricata suricatta] diamond 180 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Herpestidae Suricata Suricata suricatta
29814987 29814987 PRJNA1111146_P_NODE_249471_length_196_cov_1.853147_g248333_i0 PRJNA1111146 249471 196 1.853147 3.6321681199999998 Cavia porcellus 10141 Chordata Chordata 48.1 2.57e-4   NR XP_063101670.1 10141 g248333 i0 61.8 0.520408163265306 34 13 52 0 111 10 557 590 XP_063101670.1 LOW QUALITY PROTEIN: uncharacterized protein LOC106026455 [Cavia porcellus] diamond 102 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Caviidae Cavia Cavia porcellus
30162353 30162353 PRJNA1111146_P_NODE_317012_length_184_cov_2.282443_g315874_i0 PRJNA1111146 317012 184 2.2824430000000002 4.19969512 Odocoileus virginianus 9874 Chordata Chordata 72.8 1.55e-13   NR XP_070309256.1 9874 g315874 i0 83.3 0.684782608695652 42 7 68.5 0 58 183 191 232 XP_070309256.1 G1/S-specific cyclin-D2 isoform X1 [Odocoileus virginianus] diamond 126 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
30447138 30447138 PRJNA1111146_P_NODE_91453_length_248_cov_1.830769_g90315_i0 PRJNA1111146 91453 248 1.830769 4.54030712 Oryctolagus cuniculus 9986 Chordata Chordata 60.1 3.13e-8   NR XP_069906595.1 9986 g90315 i0 59.6 2.2741935483871 47 19 56.9 0 189 49 594 640 XP_069906595.1 LOW QUALITY PROTEIN: LINE-1 retrotransposable element ORF2 protein [Oryctolagus cuniculus] diamond 564 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
30604847 30604847 PRJNA1111146_P_NODE_342713_length_183_cov_0.869231_g341575_i0 PRJNA1111146 342713 183 0.869231 1.59069273 Cnephaeus nilssonii 3371016 Chordata Chordata 62.8 1.41e-9   NR KAK1345167.1 3371016 g341575 i0 77.5 14.4098360655738 40 9 65.6 0 182 63 218 257 KAK1345167.1 hypothetical protein QTO34_013877 [Cnephaeus nilssonii] diamond 2637 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Cnephaeus Cnephaeus nilssonii
30754164 30754164 PRJNA1111146_P_NODE_341814_length_183_cov_0.869231_g340676_i0 PRJNA1111146 341814 183 0.869231 1.59069273 Gymnophiona 8445 Chordata Chordata 54.3 1.27e-6   NR XP_033818801.1 260995 g340676 i0 51.7 4.67213114754098 58 28 95.1 0 176 3 70 127 XP_033818801.1 NF-kappa-B inhibitor delta [Geotrypetes seraphini] diamond 855 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Dermophiidae Geotrypetes Geotrypetes seraphini
30785696 30785696 PRJNA1111146_P_NODE_295674_length_188_cov_1.133333_g294536_i0 PRJNA1111146 295674 188 1.133333 2.13066604 Mammalia 40674 Chordata Chordata 47 2.18e-4   NR KAF6435770.1 9407 g294536 i0 64.1 4.22872340425532 39 12 62.2 1 50 166 45 81 KAF6435770.1 hypothetical protein HJG63_012498 [Rousettus aegyptiacus] diamond 795 47 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
30794391 30794391 PRJNA1111146_P_NODE_231894_length_200_cov_1.217687_g230756_i0 PRJNA1111146 231894 200 1.217687 2.435374 Tiliqua scincoides 71010 Chordata Chordata 57 2.01e-7   NR XP_066486932.1 71010 g230756 i0 39.3 9.645 61 36 90 1 2 181 3744 3804 XP_066486932.1 MAX gene-associated protein isoform X1 [Tiliqua scincoides] diamond 1929 57 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Tiliqua Tiliqua scincoides
31363541 31363541 PRJNA1111146_P_NODE_369776_length_181_cov_0.890625_g368638_i0 PRJNA1111146 369776 181 0.890625 1.61203125 Muntiacus muntjak 9888 Chordata Chordata 52.4 6.45e-6   NR KAB0342827.1 9888 g368638 i0 89.3 0.464088397790055 28 3 46.4 0 4 87 380 407 KAB0342827.1 hypothetical protein FD754_019753 [Muntiacus muntjak] diamond 84 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
31679534 31679534 PRJNA1111146_P_NODE_212057_length_204_cov_1.165563_g210919_i0 PRJNA1111146 212057 204 1.165563 2.37774852 Ambystoma mexicanum 8296 Chordata Chordata 50.1 5.75e-5   NR XP_069467883.1 8296 g210919 i0 48.1 2.63235294117647 52 27 76.5 0 8 163 101 152 XP_069467883.1 uncharacterized protein [Ambystoma mexicanum] diamond 537 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
31774457 31774457 PRJNA1111146_P_NODE_341357_length_183_cov_0.869231_g340219_i0 PRJNA1111146 341357 183 0.869231 1.59069273 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 83.6 8e-18   NR KAI4571944.1 2918886 g340219 i0 93.2 0.721311475409836 44 1 68.9 1 48 173 135 178 KAI4571944.1 hypothetical protein MJG53_014050 [Ovis ammon polii x Ovis aries] diamond 132 83.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
32249533 32249533 PRJNA1111146_P_NODE_360238_length_181_cov_2.296875_g359100_i0 PRJNA1111146 360238 181 2.296875 4.15734375 Felis catus 9685 Chordata Chordata 58.5 2.58e-8   NR XP_044916283.1 9685 g359100 i0 81.8 0.729281767955801 44 6 72.9 1 48 179 154 195 XP_044916283.1 uncharacterized protein LOC123386175 [Felis catus] diamond 132 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Felis Felis catus
32565863 32565863 PRJNA1111146_P_NODE_430659_length_177_cov_0.919355_g429521_i0 PRJNA1111146 430659 177 0.919355 1.62725835 Bos mutus 72004 Chordata Chordata 50.1 3.99e-5   NR MXQ81817.1 72004 g429521 i0 100 0.372881355932203 22 0 37.3 0 14 79 263 284 MXQ81817.1 hypothetical protein [Bos mutus] diamond 66 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
32597175 32597175 PRJNA1111146_P_NODE_384340_length_180_cov_0.897638_g383202_i0 PRJNA1111146 384340 180 0.897638 1.6157484 Muntiacus reevesi 9886 Chordata Chordata 48.9 1.05e-4   NR KAB0346092.1 9886 g383202 i0 76.5 0.566666666666667 34 8 56.7 0 160 59 39 72 KAB0346092.1 hypothetical protein FD755_024261, partial [Muntiacus reevesi] diamond 102 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;