RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1111146" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111146 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27130584 27130584 PRJNA1111146_P_NODE_177362_length_211_cov_1.936709_g176224_i0 PRJNA1111146 177362 211 1.936709 4.08645599 Chlamydia ibidis 1405396 Bacteria Bacteria 66.2 2.87e-12   NR EPP35704.1 1405396 g176224 i0 82.1 0.554502369668246 39 7 55.5 0 119 3 1 39 EPP35704.1 hypothetical protein CP10139811_1116, partial [Chlamydia ibidis] diamond 117 66.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia ibidis
29088942 29088942 PRJNA1111146_P_NODE_209108_length_204_cov_2.039735_g207970_i0 PRJNA1111146 209108 204 2.039735 4.1610594 Chlamydia trachomatis 813 Bacteria Bacteria 134 1.33e-36   NR CRH60831.1 813 g207970 i0 98.5 1 68 1 100 0 1 204 224 291 CRH60831.1 Inner membrane ABC transporter permease protein ycjO [Chlamydia trachomatis] diamond 204 134 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
29625171 29625171 PRJNA1111146_P_NODE_354790_length_182_cov_0.875969_g353652_i0 PRJNA1111146 354790 182 0.875969 1.59426358 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 58.5 1.58e-8   NR HNA62286.1 2047756 g353652 i0 70.6 0.56043956043956 34 10 56 0 77 178 1 34 HNA62286.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 102 58.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
31173323 31173323 PRJNA1111146_P_NODE_286595_length_189_cov_1.676471_g285457_i0 PRJNA1111146 286595 189 1.676471 3.16853019 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 121 3.0299999999999997e-30   NR MBA3602981.1 2052176 g285457 i0 93.5 0.984126984126984 62 4 98.4 0 188 3 610 671 MBA3602981.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 186 121 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31553418 31553418 PRJNA1111146_P_NODE_401336_length_179_cov_0.904762_g400198_i0 PRJNA1111146 401336 179 0.904762 1.61952398 Chlamydia trachomatis 813 Bacteria Bacteria 48.1 1.94e-4   NR CRH62767.1 813 g400198 i0 91.3 0.385474860335196 23 2 38.5 0 110 178 23 45 CRH62767.1 Calcium/proton antiporter [Chlamydia trachomatis] diamond 69 48.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;