RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1111146" and tax_phylum = "Candidatus Liptoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Liptoniibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1111146 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28552304 28552304 PRJNA1111146_P_NODE_415347_length_178_cov_0.912000_g414209_i0 PRJNA1111146 415347 178 0.912 1.62336 Candidatus Liptonbacteria bacterium 2528273 Bacteria Bacteria 74.3 7.61e-14   NR MBM3257391.1 2528273 g414209 i0 56.9 2.96629213483146 58 24 96.1 1 1 171 206 263 MBM3257391.1 D-alanine--D-alanine ligase [Candidatus Liptonbacteria bacterium] diamond 528 74.3 1 Bacteria Bacteria candidate phyla   Candidatus Liptoniibacteriota         Candidatus Liptonbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;