RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1111146" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1111146 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27920549 27920549 PRJNA1111146_P_NODE_195425_length_207_cov_1.474026_g194287_i0 PRJNA1111146 195425 207 1.474026 3.05123382 Bodo saltans 75058 Euglenozoa other_Eukaryota 116 3.6199999999999995e-30   NR CUG92876.1 75058 g194287 i0 79 0.898550724637681 62 13 89.9 0 205 20 205 266 CUG92876.1 NLI-interacting factor, putative [Bodo saltans] diamond 186 116 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
28741593 28741593 PRJNA1111146_P_NODE_61947_length_273_cov_1.513636_g60809_i0 PRJNA1111146 61947 273 1.513636 4.13222628 Naegleria morganensis 159475 Heterolobosea other_Eukaryota 61.2 3.59e-9   NR CAC38865.1 159475 g60809 i0 38.6 0.769230769230769 70 42 76.9 1 35 244 105 173 CAC38865.1 putative endonuclease [Naegleria morganensis] diamond 210 61.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria morganensis
31584976 31584976 PRJNA1111146_P_NODE_290296_length_189_cov_1.029412_g289158_i0 PRJNA1111146 290296 189 1.029412 1.94558868 Stygiella incarcerata 1712417 Root_unresolved Root_unresolved 79.7 5.27e-17   NR ANM86218.1 1712417 g289158 i0 66.7 5.12698412698413 51 17 81 0 154 2 8 58 ANM86218.1 40S ribosomal protein S18 [Stygiella incarcerata] diamond 969 79.7 1 Eukaryota Discoba       Jakobida Stygiellidae Stygiella Stygiella incarcerata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;