RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1111146" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1111146 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7869459 7869459 PRJNA1111146_P_NODE_383687_length_180_cov_0.897638_g382549_i0 PRJNA1111146 383687 180 0.897638 1.6157484 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 77.8 4.91e-17   NR PRP85004.1 1890364 g382549 i0 83.3 0.7 42 7 70 0 180 55 39 80 PRP85004.1 hypothetical protein PROFUN_07292 [Planoprotostelium fungivorum] diamond 126 77.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30384180 30384180 PRJNA1111146_P_NODE_415913_length_178_cov_0.912000_g414775_i0 PRJNA1111146 415913 178 0.912 1.62336 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 42.7 0.0161   NR XP_642434.2 352472 g414775 i0 39 0.99438202247191 59 33 96.1 2 171 1 507 564 XP_642434.2 hypothetical protein DDB_G0278703 [Dictyostelium discoideum AX4] diamond 177 42.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
31521695 31521695 PRJNA1111146_P_NODE_339616_length_183_cov_0.869231_g338478_i0 PRJNA1111146 339616 183 0.869231 1.59069273 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 58.9 3.3e-8   NR XP_004368209.1 1257118 g338478 i0 85.7 0.459016393442623 28 4 45.9 0 1 84 101 128 XP_004368209.1 acidstable alpha-amylase [Acanthamoeba castellanii str. Neff] diamond 84 58.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;