RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA1111082" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 22 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1111082 · 22 ✖

analysis 1

  • diamond · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6593354 6593354 PRJNA1111082_P_NODE_11766_length_246_cov_0.901734_g11721_i0 PRJNA1111082 11766 246 0.901734 2.21826564 Kofleriaceae bacterium 2212474 Bacteria Bacteria 145 1.24e-39   NR MFN0247944.1 2212474 g11721 i0 87.7 1.97560975609756 81 10 98.8 0 245 3 351 431 MFN0247944.1 sigma-54-dependent transcriptional regulator [Kofleriaceae bacterium] diamond 486 145 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
16792360 16792360 PRJNA1111082_P_NODE_10654_length_252_cov_0.871508_g10609_i0 PRJNA1111082 10654 252 0.871508 2.19620016 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 95.1 7.95e-22   NR MEI8259493.1 2026735 g10609 i0 51.8 0.988095238095238 83 37 98.8 2 250 2 132 211 MEI8259493.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 249 95.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
16792393 16792393 PRJNA1111082_P_NODE_11834_length_246_cov_0.901734_g11789_i0 PRJNA1111082 11834 246 0.901734 2.21826564 Polyangia bacterium 3058050 Bacteria Bacteria 116 1.37e-29   NR MFO0579530.1 3058050 g11789 i0 68.8 1.96341463414634 80 25 97.6 0 5 244 61 140 MFO0579530.1 Ku protein [Polyangia bacterium] diamond 483 116 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
23167578 23167578 PRJNA1111082_P_NODE_11219_length_249_cov_0.886364_g11174_i0 PRJNA1111082 11219 249 0.886364 2.20704636 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 99.4 3.93e-22   NR MBV8356635.1 2026735 g11174 i0 54.3 1.95180722891566 81 37 97.6 0 3 245 184 264 MBV8356635.1 substrate-binding domain-containing protein [Deltaproteobacteria bacterium] diamond 486 99.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26909609 26909609 PRJNA1111082_P_NODE_12702_length_242_cov_0.923077_g12657_i0 PRJNA1111082 12702 242 0.923077 2.23384634 Myxococcaceae bacterium 2484252 Bacteria Bacteria 127 7.85e-32   NR MDB4931989.1 2484252 g12657 i0 87 1.93388429752066 77 10 95.5 0 11 241 147 223 MDB4931989.1 Spermidine synthase [Myxococcaceae bacterium] diamond 468 127 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
26909614 26909614 PRJNA1111082_P_NODE_8602_length_277_cov_1.230392_g8557_i0 PRJNA1111082 8602 277 1.230392 3.40818584 Myxococcales bacterium 2026763 Bacteria Bacteria 126 1.26e-31   NR NRA09615.1 2026763 g8557 i0 69.3 0.953068592057762 88 27 95.3 0 271 8 308 395 NRA09615.1 hypothetical protein [Myxococcales bacterium] diamond 264 126 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27415682 27415682 PRJNA1111082_P_NODE_12063_length_245_cov_0.906977_g12018_i0 PRJNA1111082 12063 245 0.906977 2.22209365 Kofleriaceae bacterium 2212474 Bacteria Bacteria 152 1.1e-40   NR HUS67750.1 2212474 g12018 i0 88.9 7.93469387755102 81 9 99.2 0 3 245 2341 2421 HUS67750.1 glucoamylase family protein [Kofleriaceae bacterium] diamond 1944 152 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27541774 27541774 PRJNA1111082_P_NODE_13004_length_229_cov_2.525641_g12959_i0 PRJNA1111082 13004 229 2.525641 5.78371789 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 116 1.8599999999999997e-30   NR MBI5443875.1 2026735 g12959 i0 77 0.96943231441048 74 17 96.9 0 224 3 91 164 MBI5443875.1 recombinase family protein [Deltaproteobacteria bacterium] diamond 222 116 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27627874 27627874 PRJNA1111082_P_NODE_11684_length_246_cov_1.803468_g11639_i0 PRJNA1111082 11684 246 1.803468 4.43653128 Myxococcota 2818505 Bacteria Bacteria 56.6 3.65e-7   NR WP_407758366.1 1872627 g11639 i0 43.1 5.47560975609756 65 31 79.3 2 202 8 153 211 WP_407758366.1 hypothetical protein [Archangium sp.] diamond 1347 56.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28299450 28299450 PRJNA1111082_P_NODE_8206_length_283_cov_1.238095_g8161_i0 PRJNA1111082 8206 283 1.238095 3.50380885 Myxococcota bacterium 2818507 Bacteria Bacteria 73.2 1.17e-12   NR HRV18513.1 2818507 g8161 i0 76.2 0.445229681978799 42 8 44.5 1 157 282 161 200 HRV18513.1 phage terminase large subunit [Myxococcota bacterium] diamond 126 73.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28646929 28646929 PRJNA1111082_P_NODE_10467_length_253_cov_0.866667_g10422_i0 PRJNA1111082 10467 253 0.866667 2.19266751 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 107 1.03e-24   NR MBK8691518.1 2026735 g10422 i0 69 1.99209486166008 84 26 99.6 0 253 2 332 415 MBK8691518.1 serine/threonine protein kinase [Deltaproteobacteria bacterium] diamond 504 107 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28710127 28710127 PRJNA1111082_P_NODE_10947_length_250_cov_0.881356_g10902_i0 PRJNA1111082 10947 250 0.881356 2.20339 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 106 1.92e-25   NR MBS1119447.1 2026735 g10902 i0 67.1 2.964 79 26 94.8 0 240 4 5 83 MBS1119447.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 741 106 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28795740 28795740 PRJNA1111082_P_NODE_10987_length_250_cov_0.881356_g10942_i0 PRJNA1111082 10987 250 0.881356 2.20339 Pseudomonadati 3379134 Bacteria Bacteria 108 5.48e-27   NR PSM31322.1 1931276 g10942 i0 80.6 1.656 72 14 86.4 0 33 248 42 113 PSM31322.1 hypothetical protein BVG81_005970 [Haliangium sp. UPWRP_2] diamond 414 108 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium sp. UPWRP_2
29688456 29688456 PRJNA1111082_P_NODE_11610_length_247_cov_0.896552_g11565_i0 PRJNA1111082 11610 247 0.896552 2.21448344 Labilithrix sp. 1971228 Bacteria Bacteria 49.7 1.05e-4   NR MFO0742119.1 1971228 g11565 i0 49 1.31174089068826 51 23 58.3 1 29 172 182 232 MFO0742119.1 hypothetical protein [Labilithrix sp.] diamond 324 49.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
29751652 29751652 PRJNA1111082_P_NODE_9591_length_263_cov_1.063158_g9546_i0 PRJNA1111082 9591 263 1.063158 2.79610554 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 129 9.33e-33   NR MBP6741669.1 2026735 g9546 i0 72.4 0.992395437262357 87 24 99.2 0 3 263 18 104 MBP6741669.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 261 129 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29878361 29878361 PRJNA1111082_P_NODE_11591_length_247_cov_0.896552_g11546_i0 PRJNA1111082 11591 247 0.896552 2.21448344 Myxococcales bacterium 2026763 Bacteria Bacteria 115 6.64e-28   NR MBL9002610.1 2026763 g11546 i0 74.7 1.0080971659919 83 20 99.6 1 1 246 182 264 MBL9002610.1 VCBS repeat-containing protein [Myxococcales bacterium] diamond 249 115 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29995992 29995992 PRJNA1111082_P_NODE_10451_length_253_cov_0.866667_g10406_i0 PRJNA1111082 10451 253 0.866667 2.19266751 Bacteria 2 Bacteria Bacteria 164 1.18e-45   NR MBK6528932.1 2026735 g10406 i0 92.9 1.99209486166008 84 6 99.6 0 253 2 194 277 MBK6528932.1 elongation factor 4 [Deltaproteobacteria bacterium] diamond 504 164 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30036236 30036236 PRJNA1111082_P_NODE_9331_length_266_cov_1.616580_g9286_i0 PRJNA1111082 9331 266 1.61658 4.3001028 Myxococcales bacterium 2026763 Bacteria Bacteria 83.2 3.71e-17   NR MBL8631927.1 2026763 g9286 i0 60.3 0.766917293233083 68 27 76.7 0 62 265 11 78 MBL8631927.1 hypothetical protein [Myxococcales bacterium] diamond 204 83.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30162330 30162330 PRJNA1111082_P_NODE_10392_length_253_cov_0.866667_g10347_i0 PRJNA1111082 10392 253 0.866667 2.19266751 Polyangia bacterium 3058050 Bacteria Bacteria 129 7.43e-34   NR MFO0577312.1 3058050 g10347 i0 73.2 0.972332015810277 82 22 97.2 0 4 249 94 175 MFO0577312.1 TauD/TfdA family dioxygenase [Polyangia bacterium] diamond 246 129 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
30573051 30573051 PRJNA1111082_P_NODE_12413_length_243_cov_0.917647_g12368_i0 PRJNA1111082 12413 243 0.917647 2.22988221 Myxococcales bacterium 2026763 Bacteria Bacteria 135 1.0699999999999999e-34   NR MBL8632289.1 2026763 g12368 i0 74.7 1.95061728395062 79 20 97.5 0 6 242 408 486 MBL8632289.1 S9 family peptidase [Myxococcales bacterium] diamond 474 135 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31426591 31426591 PRJNA1111082_P_NODE_5436_length_339_cov_2.082707_g5391_i0 PRJNA1111082 5436 339 2.082707 7.06037673 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 74.3 9.12e-14   NR MBK7065254.1 2026735 g5391 i0 48.6 0.929203539823009 105 44 85 4 337 50 47 150 MBK7065254.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 315 74.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31837636 31837636 PRJNA1111082_P_NODE_8417_length_280_cov_1.507246_g8372_i0 PRJNA1111082 8417 280 1.507246 4.2202888 Polyangia bacterium 3058050 Bacteria Bacteria 71.2 5.2e-12   NR MFO0579188.1 3058050 g8372 i0 66.7 3.225 54 15 57.9 1 117 278 9 59 MFO0579188.1 class I SAM-dependent methyltransferase [Polyangia bacterium] diamond 903 71.2 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;