RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1111082" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1111082 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27564310 27564310 PRJNA1111082_P_NODE_10004_length_257_cov_1.092391_g9959_i0 PRJNA1111082 10004 257 1.092391 2.80744487 root 1 Root_unresolved Root_unresolved 43.5 0.0155   NR MBN1881095.1 2844909 g9959 i0 39.3 1.69260700389105 61 37 71.2 0 5 187 70 130 MBN1881095.1 hypothetical protein [Candidatus Zymogenaceae bacterium] diamond 435 43.9 0.990888382687927 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Candidatus Zymogeniales Candidatus Zymogenaceae   Candidatus Zymogenaceae bacterium
29152363 29152363 PRJNA1111082_P_NODE_3349_length_420_cov_1.573487_g3304_i0 PRJNA1111082 3349 420 1.573487 6.6086454 Deltaproteobacteria bacterium RIFCSPLOWO2_ 2026735 Bacteria Bacteria 70.1 2.33e-12   NR OGQ56759.1 1797882 g3304 i0 37.2 0.671428571428571 94 59 67.1 0 44 325 15 108 OGQ56759.1 MAG: hypothetical protein A3J24_03915 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] diamond 282 70.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;