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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA1111077" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1111077 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24440451 24440451 PRJNA1111077_P_NODE_17760_length_296_cov_4.121076_g17539_i0 PRJNA1111077 17760 296 4.121076 12.19838496 Xenopus laevis 8355 Chordata Chordata 150 2.0699999999999998e-42   NR AAI53798.1 8355 g17539 i0 53 3.40540540540541 168 9 99.3 1 1 294 19 186 AAI53798.1 LOC100126647 protein [Xenopus laevis] diamond 1008 150 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
24440769 24440769 PRJNA1111077_P_NODE_31360_length_249_cov_1.409091_g31139_i0 PRJNA1111077 31360 249 1.409091 3.50863659 Oikopleura dioica 34765 Chordata Chordata 126 2.33e-34   NR CBY12761.1 34765 g31139 i0 75.3 7.80722891566265 81 20 97.6 0 247 5 98 178 CBY12761.1 unnamed protein product [Oikopleura dioica] diamond 1944 126 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
26783110 26783110 PRJNA1111077_P_NODE_26221_length_265_cov_2.635417_g26000_i0 PRJNA1111077 26221 265 2.635417 6.98385505 Orycteropus afer afer 1230840 Chordata Chordata 45.8 0.00394   NR XP_042639078.1 1230840 g26000 i0 56.3 0.362264150943396 32 14 36.2 0 2 97 244 275 XP_042639078.1 zinc finger protein interacting with ribonucleoprotein K-like, partial [Orycteropus afer afer] diamond 96 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Tubulidentata Orycteropodidae Orycteropus Orycteropus afer
27194065 27194065 PRJNA1111077_P_NODE_16422_length_308_cov_1.714894_g16201_i0 PRJNA1111077 16422 308 1.714894 5.28187352 Microcaecilia unicolor 1415580 Chordata Chordata 43.1 0.0352   NR XP_030071224.1 1415580 g16201 i0 32.9 0.827922077922078 85 54 82.8 2 51 305 39 120 XP_030071224.1 apoptosis regulatory protein Siva [Microcaecilia unicolor] diamond 255 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor
27375455 27375455 PRJNA1111077_P_NODE_15603_length_310_cov_2.894515_g15382_i0 PRJNA1111077 15603 310 2.894515 8.9729965 root 1 Root_unresolved Root_unresolved 45.1 0.0117   NR XP_041417307.1 8355 g15382 i0 40.8 4.8 49 29 47.4 0 148 2 250 298 XP_041417307.1 alpha-(1,3)-fucosyltransferase 10 isoform X2 [Xenopus laevis] diamond 1488 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
27605043 27605043 PRJNA1111077_P_NODE_8104_length_410_cov_2.652819_g7883_i0 PRJNA1111077 8104 410 2.652819 10.8765579 Microtus ochrogaster 79684 Chordata Chordata 98.2 4.46e-22   NR KAH0514278.1 79684 g7883 i0 51 0.731707317073171 100 31 60 1 410 165 119 218 KAH0514278.1 60S ribosomal protein L10a [Microtus ochrogaster] diamond 300 98.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Microtus Microtus ochrogaster
28606435 28606435 PRJNA1111077_P_NODE_29707_length_252_cov_1.720670_g29486_i0 PRJNA1111077 29707 252 1.72067 4.3360884 Opisthokonta 33154 Chordata Chordata 96.7 1.18e-22   NR MBZ3885739.1 30640 g29486 i0 60.5 76.6904761904762 76 29 89.3 1 251 27 120 195 MBZ3885739.1 40S ribosomal protein S2 [Sciurus carolinensis] diamond 19326 97.1 0.995880535530381 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
28646913 28646913 PRJNA1111077_P_NODE_22947_length_277_cov_1.509804_g22726_i0 PRJNA1111077 22947 277 1.509804 4.18215708 Polypterus senegalus 55291 Chordata Chordata 86.3 1.18e-17   NR KAG2460242.1 55291 g22726 i0 54.1 27.2490974729242 74 33 79.1 1 229 11 234 307 KAG2460242.1 TCB1 transposase, partial [Polypterus senegalus] diamond 7548 86.3 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28867786 28867786 PRJNA1111077_P_NODE_21728_length_281_cov_1.562500_g21507_i0 PRJNA1111077 21728 281 1.5625 4.390625 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 67 1.53e-10   NR CAI9166020.1 3082113 g21507 i0 79.2 0.512455516014235 48 10 51.2 0 276 133 96 143 CAI9166020.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 144 67 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
29048660 29048660 PRJNA1111077_P_NODE_20108_length_286_cov_2.619718_g19887_i0 PRJNA1111077 20108 286 2.619718 7.49239348 Metazoa 33208 Chordata Chordata 63.5 1.76e-9   NR XP_039265297.1 7725 g19887 i0 48.3 5.03496503496504 87 36 91.3 2 286 26 175 252 XP_039265297.1 40S ribosomal protein S3a-like [Styela clava] diamond 1440 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
29720067 29720067 PRJNA1111077_P_NODE_28510_length_257_cov_1.434783_g28289_i0 PRJNA1111077 28510 257 1.434783 3.68739231 Neotoma lepida 56216 Chordata Chordata 48.1 5.61e-4   NR OBS79006.1 56216 g28289 i0 51.1 0.54863813229572 47 23 54.9 0 60 200 317 363 OBS79006.1 hypothetical protein A6R68_18616 [Neotoma lepida] diamond 141 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Neotoma Neotoma lepida
30225706 30225706 PRJNA1111077_P_NODE_38252_length_215_cov_4.267606_g38031_i0 PRJNA1111077 38252 215 4.267606 9.1753529 Staurois parvus 386267 Chordata Chordata 60.5 8.2e-10   NR CAI9618505.1 386267 g38031 i0 56.5 0.641860465116279 46 20 64.2 0 3 140 6 51 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 138 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30415656 30415656 PRJNA1111077_P_NODE_35453_length_243_cov_0.905882_g35232_i0 PRJNA1111077 35453 243 0.905882 2.20129326 Equus przewalskii 9798 Chordata Chordata 77.4 2.29e-14   NR XP_070443790.1 9798 g35232 i0 50 1.97530864197531 80 40 98.8 0 3 242 735 814 XP_070443790.1 uncharacterized protein [Equus przewalskii] diamond 480 77.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus przewalskii
30731224 30731224 PRJNA1111077_P_NODE_30274_length_251_cov_0.865169_g30053_i0 PRJNA1111077 30274 251 0.865169 2.17157419 Nyctereutes procyonoides 34880 Chordata Chordata 45.1 0.00401   NR CAD7686784.1 34880 g30053 i0 50 0.430278884462151 36 18 43 0 15 122 129 164 CAD7686784.1 unnamed protein product [Nyctereutes procyonoides] diamond 108 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
30975405 30975405 PRJNA1111077_P_NODE_36034_length_242_cov_0.911243_g35813_i0 PRJNA1111077 36034 242 0.911243 2.20520806 Opisthokonta 33154 Chordata Chordata 99.4 4.5100000000000005e-22   NR CAM2104170.1 8467 g35813 i0 53.8 9.89256198347107 80 37 99.2 0 240 1 1760 1839 CAM2104170.1 unnamed protein product [Caretta caretta] diamond 2394 100 0.994 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
31204758 31204758 PRJNA1111077_P_NODE_30135_length_251_cov_0.865169_g29914_i0 PRJNA1111077 30135 251 0.865169 2.17157419 Ictidomys tridecemlineatus 43179 Chordata Chordata 44.7 0.00423   NR KAG3288512.1 43179 g29914 i0 81.8 0.657370517928287 22 4 26.3 0 2 67 10 31 KAG3288512.1 hypothetical protein H1C71_024518, partial [Ictidomys tridecemlineatus] diamond 165 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Ictidomys Ictidomys tridecemlineatus
31363497 31363497 PRJNA1111077_P_NODE_34936_length_244_cov_0.900585_g34715_i0 PRJNA1111077 34936 244 0.900585 2.1974274 Branchiostoma floridae 7739 Chordata Chordata 104 4.059999999999999e-24   NR XP_035673863.1 7739 g34715 i0 58.8 0.983606557377049 80 33 98.4 0 241 2 352 431 XP_035673863.1 protein dcd1A-like [Branchiostoma floridae] diamond 240 104 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31702502 31702502 PRJNA1111077_P_NODE_18597_length_292_cov_1.319635_g18376_i0 PRJNA1111077 18597 292 1.319635 3.8533342 root 1 Root_unresolved Root_unresolved 206 2.04e-61   NR XP_030110853.2 10090 g18376 i0 97.9 15.9246575342466 97 2 99.7 0 291 1 205 301 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 4650 207 0.995169082125604 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31711284 31711284 PRJNA1111077_P_NODE_20297_length_286_cov_1.267606_g20076_i0 PRJNA1111077 20297 286 1.267606 3.62535316 Xenopus laevis 8355 Chordata Chordata 125 2.15e-31   NR XP_041433304.1 8355 g20076 i0 59.1 1.95104895104895 93 38 97.6 0 4 282 369 461 XP_041433304.1 uncharacterized protein LOC121398305 [Xenopus laevis] diamond 558 125 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
31742778 31742778 PRJNA1111077_P_NODE_33317_length_246_cov_1.485549_g33096_i0 PRJNA1111077 33317 246 1.485549 3.65445054 Willisornis vidua 1566151 Chordata Chordata 75.5 1.12e-13   NR KAJ7425621.1 1566151 g33096 i0 48.8 2.92682926829268 80 40 97.6 1 6 245 441 519 KAJ7425621.1 Intraflagellar transport protein 80 like protein [Willisornis vidua] diamond 720 75.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Thamnophilidae Willisornis Willisornis vidua
31996030 31996030 PRJNA1111077_P_NODE_24558_length_271_cov_2.681818_g24337_i0 PRJNA1111077 24558 271 2.681818 7.26772678 Eschrichtius robustus 9764 Chordata Chordata 71.2 4.75e-12   NR KAJ8777472.1 9764 g24337 i0 60.9 0.763837638376384 69 14 72 2 269 75 125 184 KAJ8777472.1 hypothetical protein J1605_014475 [Eschrichtius robustus] diamond 207 71.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
32090942 32090942 PRJNA1111077_P_NODE_22678_length_278_cov_1.502439_g22457_i0 PRJNA1111077 22678 278 1.502439 4.17678042 Castor canadensis 51338 Chordata Chordata 112 3.14e-29   NR XP_020010722.1 51338 g22457 i0 66.3 15.8848920863309 92 31 99.3 0 1 276 26 117 XP_020010722.1 calmodulin-alpha-like [Castor canadensis] diamond 4416 113 0.991150442477876 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Castoridae Castor Castor canadensis
32122736 32122736 PRJNA1111077_P_NODE_24678_length_271_cov_1.555556_g24457_i0 PRJNA1111077 24678 271 1.555556 4.21555676 Mus musculus 10090 Chordata Chordata 43.1 0.0379   NR NP_598754.2 10090 g24457 i0 40 0.608856088560886 55 33 60.9 0 252 88 2 56 NP_598754.2 periodic tryptophan protein 1 homolog [Mus musculus] diamond 165 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
32880338 32880338 PRJNA1111077_P_NODE_32600_length_247_cov_1.770115_g32379_i0 PRJNA1111077 32600 247 1.770115 4.37218405 Marmota marmota marmota 9994 Chordata Chordata 43.5 0.0125   NR XP_048646664.1 9994 g32379 i0 51.3 0.473684210526316 39 15 47.4 1 128 244 17 51 XP_048646664.1 trafficking protein particle complex subunit 6A isoform X2 [Marmota marmota marmota] diamond 117 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota marmota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;