RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1111077" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1111077 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11224504 11224504 PRJNA1111077_P_NODE_25189_length_269_cov_1.882653_g24968_i0 PRJNA1111077 25189 269 1.882653 5.06433657 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 128 1.27e-34   NR EAA19392.1 73239 g24968 i0 70.5 5.88847583643123 88 26 98.1 0 4 267 10 97 EAA19392.1 ribosomal protein L22 [Plasmodium yoelii yoelii] diamond 1584 128 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
29143536 29143536 PRJNA1111077_P_NODE_18989_length_290_cov_1.419355_g18768_i0 PRJNA1111077 18989 290 1.419355 4.1161295 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 70.9 3.4e-12   NR XP_625504.1 353152 g18768 i0 60 1.13793103448276 55 22 56.9 0 258 94 204 258 XP_625504.1 60S ribosomal protein L7A, partial [Cryptosporidium parvum Iowa II] diamond 330 71.6 0.990223463687151 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;