RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1111077" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 9 ✖

bioproject 1

  • PRJNA1111077 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4041181 4041181 PRJNA1111077_P_NODE_11164_length_354_cov_2.466192_g10943_i0 PRJNA1111077 11164 354 2.466192 8.73031968 Pyrococcus furiosus 2261 Archaea Archaea 237 2.37e-71   NR 4AHC_A 2261 g10943 i0 100 0.991525423728814 117 0 99.2 0 3 353 197 313 4AHC_A Chain A, DNA POLYMERASE [Pyrococcus furiosus] diamond 351 237 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
28772977 28772977 PRJNA1111077_P_NODE_20207_length_286_cov_1.516432_g19986_i0 PRJNA1111077 20207 286 1.516432 4.33699552 Pyrococcus furiosus 2261 Archaea Archaea 191 1.1699999999999999e-54   NR 4AHC_A 2261 g19986 i0 95.8 0.996503496503496 95 4 99.7 0 1 285 81 175 4AHC_A Chain A, DNA POLYMERASE [Pyrococcus furiosus] diamond 285 191 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
29143535 29143535 PRJNA1111077_P_NODE_13809_length_319_cov_1.252033_g13588_i0 PRJNA1111077 13809 319 1.252033 3.99398527 root 1 Root_unresolved Root_unresolved 206 3.72e-60   NR 4AHC_A 2261 g13588 i0 100 2.99059561128527 106 0 99.7 0 1 318 604 709 4AHC_A Chain A, DNA POLYMERASE [Pyrococcus furiosus] diamond 954 206 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
29625129 29625129 PRJNA1111077_P_NODE_30650_length_250_cov_1.593220_g30429_i0 PRJNA1111077 30650 250 1.59322 3.98305 Methanobacteriaceae archaeon 2099680 Archaea Archaea 155 1.29e-45   NR NYB28030.1 2099680 g30429 i0 90.4 1.992 83 8 99.6 0 249 1 133 215 NYB28030.1 DNA repair and recombination protein RadB [Methanobacteriaceae archaeon] diamond 498 155 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
30510062 30510062 PRJNA1111077_P_NODE_26313_length_265_cov_1.604167_g26092_i0 PRJNA1111077 26313 265 1.604167 4.25104255 Methanobacteriota archaeon 2026739 Archaea Archaea 69.7 1.56e-11   NR MBE28316.1 2026739 g26092 i0 39.7 0.883018867924528 78 44 88.3 1 7 240 194 268 MBE28316.1 hypothetical protein [Methanobacteriota archaeon] diamond 234 69.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
31078969 31078969 PRJNA1111077_P_NODE_4475_length_535_cov_1.852814_g4254_i0 PRJNA1111077 4475 535 1.852814 9.9125549 Pyrococcus furiosus 2261 Archaea Archaea 351 4.15e-114   NR 4AHC_A 2261 g4254 i0 97.2 0.992523364485981 177 5 99.3 0 533 3 325 501 4AHC_A Chain A, DNA POLYMERASE [Pyrococcus furiosus] diamond 531 351 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus
31268499 31268499 PRJNA1111077_P_NODE_8715_length_397_cov_0.950617_g8494_i0 PRJNA1111077 8715 397 0.950617 3.77394949 Methanoregula sp. 2052170 Archaea Archaea 61.2 7.37e-8   NR WP_373007287.1 2052170 g8494 i0 39.2 1.4735516372796 97 42 62.7 3 385 137 145 238 WP_373007287.1 TIGR03768 family metallophosphoesterase [Methanoregula sp.] diamond 585 61.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
32344293 32344293 PRJNA1111077_P_NODE_29479_length_253_cov_1.622222_g29258_i0 PRJNA1111077 29479 253 1.622222 4.10422166 Methanobacteriaceae archaeon 2099680 Archaea Archaea 85.1 7.04e-18   NR HNR26619.1 2099680 g29258 i0 61.3 1.89723320158103 80 25 93.7 2 17 253 31 105 HNR26619.1 hypothetical protein [Methanobacteriaceae archaeon] diamond 480 85.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
32534085 32534085 PRJNA1111077_P_NODE_34219_length_245_cov_0.895349_g33998_i0 PRJNA1111077 34219 245 0.895349 2.19360505 Candidatus Poseidoniales archaeon 2163009 Archaea Archaea 46.6 9.82e-5   NR MFL2940547.1 2163009 g33998 i0 70.4 0.330612244897959 27 8 33.1 0 244 164 8 34 MFL2940547.1 BspA family leucine-rich repeat surface protein [Candidatus Poseidoniales archaeon] diamond 81 46.6 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;