RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1108487" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1108487 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7866177 7866177 PRJNA1108487_P_NODE_4407_length_332_cov_1.505792_g4341_i0 PRJNA1108487 4407 332 1.505792 4.99922944 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 165 2.56e-49   NR AFX73089.1 497998 g4341 i0 66.4 2.97289156626506 110 37 99.4 0 330 1 32 141 AFX73089.1 elongation factor 2 alpha, partial [Arcella hemisphaerica] diamond 987 166 0.993975903614458 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
30478575 30478575 PRJNA1108487_P_NODE_9813_length_247_cov_1.344828_g9747_i0 PRJNA1108487 9813 247 1.344828 3.32172516 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 82 9.93e-17   NR AAY21191.1 5778 g9747 i0 56.8 1.96761133603239 81 35 98.4 0 1 243 166 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 486 82 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;