RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1108487" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108487 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24439360 24439360 PRJNA1108487_P_NODE_8060_length_256_cov_2.497268_g7994_i0 PRJNA1108487 8060 256 2.497268 6.39300608 Theromyzon tessulatum 13286 Annelida Annelida 108 3.1300000000000003e-26   NR AAN28680.1 13286 g7994 i0 68.8 0.90234375 77 19 84.4 2 255 40 275 351 AAN28680.1 cathepsin L [Theromyzon tessulatum] diamond 231 108 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Rhynchobdellida Glossiphoniidae Theromyzon Theromyzon tessulatum
30257632 30257632 PRJNA1108487_P_NODE_11152_length_242_cov_1.384615_g11086_i0 PRJNA1108487 11152 242 1.384615 3.3507683 Helobdella robusta 6412 Annelida Annelida 65.9 2.6e-10   NR XP_009019147.1 6412 g11086 i0 51.5 1.72314049586777 68 31 81.8 1 237 40 345 412 XP_009019147.1 hypothetical protein HELRODRAFT_185682 [Helobdella robusta] diamond 417 65.9 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Rhynchobdellida Glossiphoniidae Helobdella Helobdella robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;