RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1108487" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1108487 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28795722 28795722 PRJNA1108487_P_NODE_6287_length_286_cov_1.830986_g6221_i0 PRJNA1108487 6287 286 1.830986 5.23661996 root 1 Root_unresolved Root_unresolved 74.7 4.6e-14   NR MEK9806258.1 2026739 g6221 i0 53 1.6993006993007 83 35 82.9 2 284 48 121 203 MEK9806258.1 hypothetical protein [Methanobacteriota archaeon] diamond 486 74.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29467350 29467350 PRJNA1108487_P_NODE_7830_length_260_cov_1.459893_g7764_i0 PRJNA1108487 7830 260 1.459893 3.7957218 Methanobacteriota archaeon 2026739 Archaea Archaea 47.8 7e-5   NR MBN74715.1 2026739 g7764 i0 61.1 0.415384615384615 36 14 41.5 0 248 141 39 74 MBN74715.1 hypothetical protein [Methanobacteriota archaeon] diamond 108 47.8 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
32534042 32534042 PRJNA1108487_P_NODE_9859_length_247_cov_0.896552_g9793_i0 PRJNA1108487 9859 247 0.896552 2.21448344 Methanobrevibacter sp. 66852 Archaea Archaea 47 0.00132   NR MEE1133769.1 66852 g9793 i0 29.5 0.947368421052632 78 50 94.7 1 246 13 2721 2793 MEE1133769.1 Ig-like domain repeat protein [Methanobrevibacter sp.] diamond 234 47 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;