RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1108009" and tax_phylum = "Fornicata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1108009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28710076 28710076 PRJNA1108009_P_NODE_3387_length_757_cov_2.418129_g3100_i0 PRJNA1108009 3387 757 2.418129 18.30523653 Kipferlia bialata 797122 Fornicata other_Eukaryota 51.6 0.00216   NR GIQ80334.1 797122 g3100 i0 27.3 0.812417437252312 205 129 74.1 7 633 73 719 921 GIQ80334.1 hypothetical protein KIPB_001114, partial [Kipferlia bialata] diamond 615 51.6 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
31015567 31015567 PRJNA1108009_P_NODE_26915_length_248_cov_0.880000_g26597_i0 PRJNA1108009 26915 248 0.88 2.1824 Giardia intestinalis 5741 Fornicata other_Eukaryota 42.7 0.0383   NR XP_001708666.1 5741 g26597 i0 53.8 0.471774193548387 39 17 47.2 1 129 13 122 159 XP_001708666.1 VSP [Giardia intestinalis] diamond 117 42.7 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32848817 32848817 PRJNA1108009_P_NODE_22780_length_265_cov_1.572917_g22462_i0 PRJNA1108009 22780 265 1.572917 4.16823005 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 63.5 3.57e-10   NR KAG9392754.1 201153 g22462 i0 34.1 3 88 53 99.6 1 265 2 75 157 KAG9392754.1 Translationally controlled tumor protein [Carpediemonas membranifera] diamond 795 63.5 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;