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contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA1108009" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1108009 · 15 ✖

analysis 1

  • diamond · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27225580 27225580 PRJNA1108009_P_NODE_28363_length_246_cov_0.890173_g28045_i0 PRJNA1108009 28363 246 0.890173 2.18982558 Loxodonta africana 9785 Chordata Chordata 73.9 3.92e-13   NR XP_003415638.1 9785 g28045 i0 41.9 0.902439024390244 74 43 90.2 0 17 238 210 283 XP_003415638.1 piwi-like protein 4 [Loxodonta africana] diamond 222 73.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana
28141797 28141797 PRJNA1108009_P_NODE_30565_length_243_cov_0.905882_g30247_i0 PRJNA1108009 30565 243 0.905882 2.20129326 Camelus ferus 419612 Chordata Chordata 79.3 1.9e-16   NR EPY79170.1 419612 g30247 i0 61.5 58.3086419753086 65 25 80.2 0 242 48 86 150 EPY79170.1 eukaryotic translation initiation factor 1A, Y-chromosomal isoform 1 [Camelus ferus] diamond 14169 79.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus ferus
28227314 28227314 PRJNA1108009_P_NODE_5966_length_571_cov_1.524096_g5654_i0 PRJNA1108009 5966 571 1.524096 8.70258816 Metazoa 33208 Chordata Chordata 63.2 7.41e-8   NR XP_035675233.1 7739 g5654 i0 48.1 2.8476357267951 54 28 28.4 0 315 154 348 401 XP_035675233.1 spondin-1-like isoform X2 [Branchiostoma floridae] diamond 1626 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28394077 28394077 PRJNA1108009_P_NODE_10306_length_420_cov_1.896254_g9988_i0 PRJNA1108009 10306 420 1.896254 7.9642668 Galeopterus variegatus 482537 Chordata Chordata 45.1 0.0393   NR XP_008588797.1 482537 g9988 i0 34.1 0.921428571428571 129 66 90 6 8 385 802 914 XP_008588797.1 PREDICTED: LOW QUALITY PROTEIN: laminin subunit alpha-1, partial [Galeopterus variegatus] diamond 387 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dermoptera Cynocephalidae Galeopterus Galeopterus variegatus
29215290 29215290 PRJNA1108009_P_NODE_10089_length_426_cov_1.215297_g9771_i0 PRJNA1108009 10089 426 1.215297 5.17716522 Myxine glutinosa 7769 Chordata Chordata 144 2.14e-40   NR XP_067960906.1 7769 g9771 i0 54.9 8.8169014084507 142 60 97.9 2 425 9 14 154 XP_067960906.1 small ribosomal subunit protein eS8 [Myxine glutinosa] diamond 3756 144 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
29364396 29364396 PRJNA1108009_P_NODE_29029_length_245_cov_0.895349_g28711_i0 PRJNA1108009 29029 245 0.895349 2.19360505 Aves 8782 Chordata Chordata 87.4 5.03e-19   NR XP_008946640.1 57421 g28711 i0 60 20.4244897959184 80 25 93.1 2 245 18 74 150 XP_008946640.1 PREDICTED: probable ATP-dependent RNA helicase DDX49, partial [Merops nubicus] diamond 5004 88.2 0.99092970521542 Eukaryota Opisthokonta Metazoa Chordata Aves Coraciiformes Meropidae Merops Merops nubicus
29404551 29404551 PRJNA1108009_P_NODE_14429_length_347_cov_2.339416_g14111_i0 PRJNA1108009 14429 347 2.339416 8.11777352 Chrysemys picta bellii 8478 Chordata Chordata 124 4.869999999999999e-31   NR XP_023958117.2 8478 g14111 i0 56 7.01152737752161 116 49 99.4 2 2 346 112 226 XP_023958117.2 ribosomal protein uL3-like isoform X2 [Chrysemys picta bellii] diamond 2433 124 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Chrysemys Chrysemys picta
29901164 29901164 PRJNA1108009_P_NODE_27571_length_247_cov_0.885057_g27253_i0 PRJNA1108009 27571 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 78.2 1.23e-14   NR XP_047934078.1 8845 g27253 i0 52.9 39.6437246963563 68 32 82.6 0 4 207 157 224 XP_047934078.1 exosome complex component RRP45 isoform X1 [Anser cygnoides] diamond 9792 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
31386367 31386367 PRJNA1108009_P_NODE_15396_length_335_cov_1.366412_g15078_i0 PRJNA1108009 15396 335 1.366412 4.5774802 Chordata 7711 Chordata Chordata 158 1e-46   NR XP_069480798.1 8296 g15078 i0 71.8 36.8417910447761 110 31 98.5 0 334 5 51 160 XP_069480798.1 small ribosomal subunit protein eS17 [Ambystoma mexicanum] diamond 12342 158 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
31711243 31711243 PRJNA1108009_P_NODE_28217_length_246_cov_0.890173_g27899_i0 PRJNA1108009 28217 246 0.890173 2.18982558 Echinops telfairi 9371 Chordata Chordata 66.6 1.55e-10   NR XP_045147242.1 9371 g27899 i0 54.4 2.76829268292683 68 30 82.9 1 240 37 562 628 XP_045147242.1 ATP-binding cassette sub-family C member 2 isoform X2 [Echinops telfairi] diamond 681 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
31837564 31837564 PRJNA1108009_P_NODE_29837_length_244_cov_0.900585_g29519_i0 PRJNA1108009 29837 244 0.900585 2.1974274 Heteronotia binoei 13085 Chordata Chordata 43.9 0.0144   NR XP_060096804.1 13085 g29519 i0 30.3 0.934426229508197 76 51 93.4 1 242 15 576 649 XP_060096804.1 neutral ceramidase [Heteronotia binoei] diamond 228 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Heteronotia Heteronotia binoei
32272149 32272149 PRJNA1108009_P_NODE_31918_length_238_cov_3.387879_g31600_i0 PRJNA1108009 31918 238 3.387879 8.06315202 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.8 4.48e-4   NR XP_066287101.1 7740 g31600 i0 38.3 3.3781512605042 81 32 97.1 3 234 4 32 98 XP_066287101.1 large ribosomal subunit protein uL6-like [Branchiostoma lanceolatum] diamond 804 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
32280929 32280929 PRJNA1108009_P_NODE_27959_length_246_cov_1.335260_g27641_i0 PRJNA1108009 27959 246 1.33526 3.2847396 Oikopleura dioica 34765 Chordata Chordata 65.9 2.67e-11   NR CAG5109510.1 34765 g27641 i0 60.4 2.5609756097561 53 21 64.6 0 161 3 13 65 CAG5109510.1 Oidioi.mRNA.OKI2018_I69.chr2.g4037.t1.cds [Oikopleura dioica] diamond 630 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
32493657 32493657 PRJNA1108009_P_NODE_20159_length_286_cov_1.446009_g19841_i0 PRJNA1108009 20159 286 1.446009 4.13558574 Chordata 7711 Chordata Chordata 104 1.84e-26   NR XP_032814458.1 7757 g19841 i0 64.5 3.89160839160839 93 33 97.6 0 2 280 4 96 XP_032814458.1 60S ribosomal protein L35 isoform X2 [Petromyzon marinus] diamond 1113 105 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
32628269 32628269 PRJNA1108009_P_NODE_29140_length_245_cov_0.895349_g28822_i0 PRJNA1108009 29140 245 0.895349 2.19360505 Engystomops pustulosus 76066 Chordata Chordata 52.8 9.9e-6   NR KAG8566174.1 76066 g28822 i0 62.5 7.73877551020408 40 15 49 0 121 2 2 41 KAG8566174.1 hypothetical protein GDO81_013129 [Engystomops pustulosus] diamond 1896 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;