RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1108009" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1108009 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9140725 9140725 PRJNA1108009_P_NODE_27428_length_247_cov_0.885057_g27110_i0 PRJNA1108009 27428 247 0.885057 2.18609079 Campylobacter 194 Bacteria Bacteria 159 2.2799999999999998e-48   NR WP_086224259.1 194 g27110 i0 96.3 1.96761133603239 81 3 98.4 0 245 3 25 105 WP_086224259.1 MULTISPECIES: acyl-CoA thioesterase [Campylobacter] diamond 486 159 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter  
32785745 32785745 PRJNA1108009_P_NODE_26220_length_249_cov_0.875000_g25902_i0 PRJNA1108009 26220 249 0.875 2.17875 Helicobacter sp. 16-1353 2004996 Bacteria Bacteria 73.9 2.66e-13   NR WP_112060588.1 2004996 g25902 i0 50.8 0.734939759036145 61 30 73.5 0 6 188 164 224 WP_112060588.1 FecCD family ABC transporter permease [Helicobacter sp. 16-1353] diamond 183 73.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 16-1353

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;