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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA1105232" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1105232 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
212579 212579 PRJNA1105232_S_NODE_4961_length_266_cov_1.299539_g4745_i0 PRJNA1105232 4961 266 1.299539 3.45677374 Mesorhabditis belari 2138241 Nematoda Nematoda 90.5 1.43e-20   NR CAJ0963925.1 2138241 g4745 i0 83.3 3.23684210526316 48 8 54.1 0 2 145 125 172 CAJ0963925.1 unnamed protein product, partial [Mesorhabditis belari] diamond 861 90.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
15515210 15515210 PRJNA1105232_S_NODE_1833_length_387_cov_5.798817_g1617_i0 PRJNA1105232 1833 387 5.798817 22.44142179 Trichinella 6333 Nematoda Nematoda 151 6.24e-44   NR KAL1284361.1 6337 g1617 i0 56.7 10.2015503875969 120 51 92.2 1 26 382 38 157 KAL1284361.1 Eukaryotic translation initiation factor [Trichinella pseudospiralis] diamond 3948 151 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
15515215 15515215 PRJNA1105232_S_NODE_2233_length_361_cov_1.823718_g2017_i0 PRJNA1105232 2233 361 1.823718 6.58362198 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 181 1.01e-51   NR NP_498263.2 6239 g2017 i0 81.9 4.38781163434903 105 19 87.3 0 359 45 426 530 NP_498263.2 Putative aldehyde dehydrogenase family 7 member A1 homolog [Caenorhabditis elegans] diamond 1584 181 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27596239 27596239 PRJNA1105232_S_NODE_13944_length_175_cov_1.682540_g13728_i0 PRJNA1105232 13944 175 1.68254 2.944445 Metazoa 33208 Nematoda Nematoda 89.4 5.74e-19   NR GMR41334.1 1317129 g13728 i0 70.7 11.9142857142857 58 17 99.4 0 174 1 425 482 GMR41334.1 hypothetical protein PMAYCL1PPCAC_11529, partial [Pristionchus mayeri] diamond 2085 90.1 0.992230854605993 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri
27699846 27699846 PRJNA1105232_S_NODE_1544_length_413_cov_2.571429_g1329_i0 PRJNA1105232 1544 413 2.571429 10.62000177 Trichuris suis 68888 Nematoda Nematoda 61.2 7.27e-8   NR KHJ42158.1 68888 g1329 i0 29.9 5.94188861985472 134 86 91.5 2 383 6 126 259 KHJ42158.1 Filamin/ABP280 repeat protein [Trichuris suis] diamond 2454 61.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
27825926 27825926 PRJNA1105232_S_NODE_15604_length_168_cov_0.873950_g15388_i0 PRJNA1105232 15604 168 0.87395 1.468236 Trichinella papuae 268474 Nematoda Nematoda 77.4 7.71e-15   NR KRZ77476.1 268474 g15388 i0 68.9 12.8571428571429 45 14 80.4 0 1 135 398 442 KRZ77476.1 Cysteine desulfurase, mitochondrial [Trichinella papuae] diamond 2160 77.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella papuae
29901156 29901156 PRJNA1105232_S_NODE_15711_length_167_cov_1.940678_g15495_i0 PRJNA1105232 15711 167 1.940678 3.24093226 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 44.3 0.00385   NR VBB27759.1 6277 g15495 i0 39.2 3.53892215568862 51 31 91.6 0 155 3 724 774 VBB27759.1 unnamed protein product [Acanthocheilonema viteae] diamond 591 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
31173223 31173223 PRJNA1105232_S_NODE_16675_length_164_cov_1.313043_g16459_i0 PRJNA1105232 16675 164 1.313043 2.15339052 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 72.4 4.38e-13   NR CAD5229356.1 465554 g16459 i0 54.7 2.90853658536585 53 24 97 0 1 159 169 221 CAD5229356.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 477 72.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
31544465 31544465 PRJNA1105232_S_NODE_6676_length_237_cov_1.106383_g6460_i0 PRJNA1105232 6676 237 1.106383 2.62212771 Rhabditida 6236 Nematoda Nematoda 103 1.05e-24   NR BAB63947.1 6239 g6460 i0 62.8 9.87341772151899 78 29 98.7 0 236 3 196 273 BAB63947.1 Ser/Thr protein phosphatase [Caenorhabditis elegans] diamond 2340 103 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31955439 31955439 PRJNA1105232_S_NODE_11957_length_187_cov_1.659420_g11741_i0 PRJNA1105232 11957 187 1.65942 3.1031154 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 75.1 6.99e-14   NR MFH4974294.1 75299 g11741 i0 48.4 5.90374331550802 62 32 99.5 0 187 2 793 854 MFH4974294.1 hypothetical protein [Gnathostoma spinigerum] diamond 1104 75.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
32439164 32439164 PRJNA1105232_S_NODE_11419_length_191_cov_1.098592_g11203_i0 PRJNA1105232 11419 191 1.098592 2.09831072 Soboliphyme baturini 241478 Nematoda Nematoda 48.9 1.25e-4   NR VDO95965.1 241478 g11203 i0 58.3 2.76439790575916 36 15 56.5 0 145 38 510 545 VDO95965.1 unnamed protein product [Soboliphyme baturini] diamond 528 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;