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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA1105232" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1105232 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7865281 7865281 PRJNA1105232_S_NODE_12147_length_186_cov_1.284672_g11931_i0 PRJNA1105232 12147 186 1.284672 2.38948992 Eolophus roseicapilla 176039 Chordata Chordata 74.3 1.27e-13   NR NXD61750.1 176039 g11931 i0 51.6 1 62 26 93.5 1 174 1 360 421 NXD61750.1 CP3A9 protein [Eolophus roseicapilla] diamond 186 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Cacatuidae Eolophus Eolophus roseicapilla
14241423 14241423 PRJNA1105232_S_NODE_4952_length_266_cov_2.041475_g4736_i0 PRJNA1105232 4952 266 2.041475 5.4303235 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 130 2.95e-36   NR XP_045708607.1 9423 g4736 i0 69.3 16.8383458646617 88 27 99.2 0 264 1 66 153 XP_045708607.1 superoxide dismutase [Cu-Zn] [Phyllostomus hastatus] diamond 4479 130 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus hastatus
25246761 25246761 PRJNA1105232_S_NODE_12000_length_187_cov_1.130435_g11784_i0 PRJNA1105232 12000 187 1.130435 2.11391345 root 1 Root_unresolved Root_unresolved 55.5 5.87e-7   NR ABR01162.1 9823 g11784 i0 66.7 1.44385026737968 45 13 70.6 2 56 187 185 228 ABR01162.1 endonuclease/reverse transcriptase [Sus scrofa] diamond 270 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
26869388 26869388 PRJNA1105232_S_NODE_17221_length_162_cov_1.840708_g17005_i0 PRJNA1105232 17221 162 1.840708 2.98194696 Aves 8782 Chordata Chordata 49.7 3.18e-6   NR NXY92808.1 390723 g17005 i0 48.1 2.88888888888889 52 27 96.3 0 7 162 12 63 NXY92808.1 NLRC3 protein [Ceyx cyanopectus] diamond 468 50.1 0.992015968063872 Eukaryota Opisthokonta Metazoa Chordata Aves Coraciiformes Alcedinidae Ceyx Ceyx cyanopectus
27004311 27004311 PRJNA1105232_S_NODE_16762_length_164_cov_0.904348_g16546_i0 PRJNA1105232 16762 164 0.904348 1.48313072 Ovis ammon polii 230172 Chordata Chordata 47 1.89e-4   NR KAI4529735.1 230172 g16546 i0 69.4 0.658536585365854 36 10 65.9 1 108 1 89 123 KAI4529735.1 hypothetical protein MG293_020413 [Ovis ammon polii] diamond 108 47 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon
27352408 27352408 PRJNA1105232_S_NODE_12623_length_183_cov_1.164179_g12407_i0 PRJNA1105232 12623 183 1.164179 2.13044757 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 48.1 2.06e-4   NR KAI4557744.1 2918886 g12407 i0 87.5 0.39344262295082 24 3 39.3 0 104 33 1 24 KAI4557744.1 hypothetical protein MJG53_018497, partial [Ovis ammon polii x Ovis aries] diamond 72 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
27501574 27501574 PRJNA1105232_S_NODE_8943_length_211_cov_1.722222_g8727_i0 PRJNA1105232 8943 211 1.722222 3.63388842 Passeriformes 9126 Chordata Chordata 57.8 1.19e-7   NR XP_017588141.1 85066 g8727 i0 42 9.81042654028436 69 38 98.1 1 207 1 278 344 XP_017588141.1 PREDICTED: AP-3 complex subunit mu-2 [Corvus brachyrhynchos] diamond 2070 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Corvus Corvus brachyrhynchos
27691186 27691186 PRJNA1105232_S_NODE_6944_length_233_cov_1.331522_g6728_i0 PRJNA1105232 6944 233 1.331522 3.10244626 Opisthokonta 33154 Chordata Chordata 67.8 7.4e-12   NR CAB3265436.1 59560 g6728 i0 53.7 3.72103004291845 54 25 69.5 0 32 193 109 162 CAB3265436.1 ras-related protein Rap-2a [Phallusia mammillata] diamond 867 68.2 0.994134897360704 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
28141779 28141779 PRJNA1105232_S_NODE_1725_length_396_cov_4.481268_g1509_i0 PRJNA1105232 1725 396 4.481268 17.74582128 Patagioenas fasciata monilis 372326 Chordata Chordata 98.2 2.07e-22   NR OPJ79048.1 372326 g1509 i0 51.4 16.8636363636364 107 45 81.1 2 395 75 24 123 OPJ79048.1 60S ribosomal protein L22-like 1 isoform B [Patagioenas fasciata monilis] diamond 6678 98.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Patagioenas Patagioenas fasciata
28204507 28204507 PRJNA1105232_S_NODE_16446_length_165_cov_0.896552_g16230_i0 PRJNA1105232 16446 165 0.896552 1.4793108 Equus asinus 9793 Chordata Chordata 41.2 0.0451   NR XP_014691338.3 9793 g16230 i0 58.8 0.618181818181818 34 14 61.8 0 109 8 32 65 XP_014691338.3 olfactory receptor 7E178-like [Equus asinus] diamond 102 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus asinus
28330917 28330917 PRJNA1105232_S_NODE_11286_length_192_cov_0.923077_g11070_i0 PRJNA1105232 11286 192 0.923077 1.77230784 Anolis sagrei 38937 Chordata Chordata 58.5 5e-8   NR XP_060614815.2 38937 g11070 i0 39.7 1.96875 63 38 98.4 0 2 190 1072 1134 XP_060614815.2 polyamine-transporting ATPase 13A2 isoform X1 [Anolis sagrei] diamond 378 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis sagrei
28583741 28583741 PRJNA1105232_S_NODE_16667_length_164_cov_1.356522_g16451_i0 PRJNA1105232 16667 164 1.356522 2.22469608 Pristis pectinata 685728 Chordata Chordata 67.8 3.62e-12   NR XP_051899363.1 685728 g16451 i0 57.7 1.90243902439024 52 22 95.1 0 162 7 101 152 XP_051899363.1 ras-related C3 botulinum toxin substrate 1-like isoform X2 [Pristis pectinata] diamond 312 67.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rhinopristiformes Pristidae Pristis Pristis pectinata
28646851 28646851 PRJNA1105232_S_NODE_7947_length_221_cov_1.511628_g7731_i0 PRJNA1105232 7947 221 1.511628 3.34069788 Bos indicus 9915 Chordata Chordata 88.6 1.49e-18   NR XP_070625079.1 9915 g7731 i0 60.9 4.57466063348416 69 27 93.7 0 209 3 97 165 XP_070625079.1 arfaptin-1 isoform X1 [Bos indicus] diamond 1011 88.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus
28669733 28669733 PRJNA1105232_S_NODE_8827_length_212_cov_1.276074_g8611_i0 PRJNA1105232 8827 212 1.276074 2.70527688 Metazoa 33208 Chordata Chordata 55.1 1.07e-6   NR XP_027792234.1 93162 g8611 i0 39.1 4.38679245283019 69 42 97.6 0 6 212 242 310 XP_027792234.1 peroxisomal biogenesis factor 16 isoform X2 [Marmota flaviventris] diamond 930 55.5 0.992792792792793 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota flaviventris
29269295 29269295 PRJNA1105232_S_NODE_15429_length_168_cov_2.260504_g15213_i0 PRJNA1105232 15429 168 2.260504 3.79764672 Opisthokonta 33154 Chordata Chordata 61.6 9.8e-10   NR XP_028669432.1 27687 g15213 i0 60.8 2.69642857142857 51 20 91.1 0 164 12 127 177 XP_028669432.1 ras-related protein R-Ras [Erpetoichthys calabaricus] diamond 453 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
29404546 29404546 PRJNA1105232_S_NODE_14749_length_171_cov_1.360656_g14533_i0 PRJNA1105232 14749 171 1.360656 2.32672176 Phallusia mammillata 59560 Chordata Chordata 44.3 0.00404   NR CAB3264530.1 59560 g14533 i0 50 2.45614035087719 34 17 59.6 0 53 154 106 139 CAB3264530.1 pol-like protein [Phallusia mammillata] diamond 420 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
29719993 29719993 PRJNA1105232_S_NODE_9170_length_209_cov_1.550000_g8954_i0 PRJNA1105232 9170 209 1.55 3.2395 Leucoraja erinaceus 7782 Chordata Chordata 47 7.35e-4   NR XP_055487656.1 7782 g8954 i0 38.3 1.66507177033493 60 36 84.7 1 11 187 232 291 XP_055487656.1 uncharacterized protein LOC129694926, partial [Leucoraja erinaceus] diamond 348 47 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
30478533 30478533 PRJNA1105232_S_NODE_12633_length_183_cov_1.164179_g12417_i0 PRJNA1105232 12633 183 1.164179 2.13044757 Ovis ammon polii x Ovis aries 2918886 Chordata Chordata 88.2 1.51e-18   NR KAI4586401.1 2918886 g12417 i0 81.5 0.885245901639344 54 10 88.5 0 19 180 1 54 KAI4586401.1 hypothetical protein MJG53_004188 [Ovis ammon polii x Ovis aries] diamond 162 88.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon polii x Ovis aries
30627534 30627534 PRJNA1105232_S_NODE_7153_length_230_cov_3.060773_g6937_i0 PRJNA1105232 7153 230 3.060773 7.0397779 Aves 8782 Chordata Chordata 50.8 4.4e-5   NR NWI88999.1 9163 g6937 i0 51.2 17.2565217391304 43 21 56.1 0 44 172 26 68 NWI88999.1 RPGR regulator [Pitta sordida] diamond 3969 51.2 0.9921875 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Pittidae Pitta Pitta sordida
30880438 30880438 PRJNA1105232_S_NODE_13474_length_178_cov_1.209302_g13258_i0 PRJNA1105232 13474 178 1.209302 2.15255756 Cricetidae 337677 Chordata Chordata 62.8 3.52e-10   NR XP_028719178.1 10041 g13258 i0 54.7 5.35955056179775 53 24 89.3 0 5 163 136 188 XP_028719178.1 calcyphosin [Peromyscus leucopus] diamond 954 63.2 0.993670886075949 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Peromyscus Peromyscus leucopus
31521573 31521573 PRJNA1105232_S_NODE_8136_length_219_cov_0.917647_g7920_i0 PRJNA1105232 8136 219 0.917647 2.00964693 Hemicordylus capensis 884348 Chordata Chordata 81.6 4.5e-16   NR XP_053138678.1 884348 g7920 i0 48.6 0.958904109589041 70 35 95.9 1 217 8 362 430 XP_053138678.1 cholesterol 7-desaturase nvd-like [Hemicordylus capensis] diamond 210 81.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Cordylidae Hemicordylus Hemicordylus capensis
31923857 31923857 PRJNA1105232_S_NODE_6957_length_233_cov_0.847826_g6741_i0 PRJNA1105232 6957 233 0.847826 1.97543458 root 1 Root_unresolved Root_unresolved 151 3.16e-41   NR XP_030110853.2 10090 g6741 i0 97.4 16.8540772532189 77 2 99.1 0 231 1 129 205 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 3927 151 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
32059157 32059157 PRJNA1105232_S_NODE_5738_length_251_cov_2.678218_g5522_i0 PRJNA1105232 5738 251 2.678218 6.72232718 Oikopleura dioica 34765 Chordata Chordata 108 3.92e-25   NR CBY36017.1 34765 g5522 i0 64.6 2.90438247011952 82 29 98 0 250 5 763 844 CBY36017.1 unnamed protein product [Oikopleura dioica] diamond 729 108 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
32122669 32122669 PRJNA1105232_S_NODE_6578_length_238_cov_1.703704_g6362_i0 PRJNA1105232 6578 238 1.703704 4.05481552 Latimeria chalumnae 7897 Chordata Chordata 58.2 1.21e-7   NR XP_064421318.1 7897 g6362 i0 46.6 2.92436974789916 58 30 71.8 1 66 236 347 404 XP_064421318.1 dematin [Latimeria chalumnae] diamond 696 58.2 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
32217467 32217467 PRJNA1105232_S_NODE_8938_length_211_cov_1.864198_g8722_i0 PRJNA1105232 8938 211 1.864198 3.93345778 Crocuta crocuta 9678 Chordata Chordata 41.6 0.0181   NR KAF0883704.1 9678 g8722 i0 46.2 0.554502369668246 39 21 55.5 0 54 170 1 39 KAF0883704.1 LORF2 protein, partial [Crocuta crocuta] diamond 117 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
32280914 32280914 PRJNA1105232_S_NODE_13999_length_175_cov_1.238095_g13783_i0 PRJNA1105232 13999 175 1.238095 2.16666625 Nyctereutes procyonoides 34880 Chordata Chordata 48.5 1.32e-4   NR XP_055194089.1 34880 g13783 i0 60 0.6 35 14 60 0 123 19 2 36 XP_055194089.1 olfactory receptor 13H1-like [Nyctereutes procyonoides] diamond 105 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
32398667 32398667 PRJNA1105232_S_NODE_11379_length_191_cov_1.830986_g11163_i0 PRJNA1105232 11379 191 1.830986 3.49718326 Bovidae 9895 Chordata Chordata 49.7 6.37e-5   NR XP_070624838.1 9915 g11163 i0 53.2 3.69109947643979 47 19 69.1 1 191 60 266 312 XP_070624838.1 uncharacterized protein [Bos indicus] diamond 705 50.1 0.992015968063872 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus
32439166 32439166 PRJNA1105232_S_NODE_1639_length_404_cov_9.760563_g1423_i0 PRJNA1105232 1639 404 9.760563 39.43267452 Oikopleura dioica 34765 Chordata Chordata 94.4 1.39e-21   NR CAG5109510.1 34765 g1423 i0 44.3 0.972772277227723 131 66 92.1 3 7 378 4 134 CAG5109510.1 Oidioi.mRNA.OKI2018_I69.chr2.g4037.t1.cds [Oikopleura dioica] diamond 393 94.4 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
32588478 32588478 PRJNA1105232_S_NODE_2599_length_341_cov_5.147260_g2383_i0 PRJNA1105232 2599 341 5.14726 17.5521566 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 113 1.09e-26   NR CAB3220013.1 59560 g2383 i0 54.2 4.08211143695015 96 39 84.5 1 292 5 324 414 CAB3220013.1 ornithine decarboxylase [Phallusia mammillata] diamond 1392 113 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;