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contig_metadata

23 rows where analysis = "diamond", bioproject = "PRJNA1105232" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 23 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1105232 · 23 ✖

analysis 1

  • diamond · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10416048 10416048 PRJNA1105232_S_NODE_7209_length_229_cov_7.383333_g6993_i0 PRJNA1105232 7209 229 7.383333 16.90783257 Microbacterium sp. 51671 Bacteria Bacteria 55.5 1.51e-7   NR WP_416890994.1 51671 g6993 i0 57.1 3.32751091703057 42 18 55 0 127 2 2 43 WP_416890994.1 cold-shock protein [Microbacterium sp.] diamond 762 55.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp.
19338424 19338424 PRJNA1105232_S_NODE_2456_length_348_cov_3.220736_g2240_i0 PRJNA1105232 2456 348 3.220736 11.20816128 Bacteria 2 Bacteria Bacteria 186 2.3799999999999994e-54   NR MCW2777020.1 1909291 g2240 i0 77.6 22.3275862068966 116 26 100 0 348 1 203 318 MCW2777020.1 adenosylhomocysteinase [Frankiales bacterium] diamond 7770 186 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales     Frankiales bacterium
20146789 20146789 PRJNA1105232_S_NODE_5236_length_260_cov_1.274882_g5020_i0 PRJNA1105232 5236 260 1.274882 3.3146932 Microbacterium esteraromaticum 57043 Bacteria Bacteria 171 3.0899999999999994e-52   NR PYC99494.1 57043 g5020 i0 98.8 0.980769230769231 85 1 98.1 0 4 258 53 137 PYC99494.1 hypothetical protein B4U78_016800, partial [Microbacterium esteraromaticum] diamond 255 171 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium esteraromaticum
24438519 24438519 PRJNA1105232_S_NODE_5980_length_247_cov_1.656566_g5764_i0 PRJNA1105232 5980 247 1.656566 4.09171802 Streptomyces sp. TP-A 1931 Bacteria Bacteria 124 1.17e-33   NR WP_234340359.1 552354 g5764 i0 72.6 5.31983805668016 73 20 88.7 0 221 3 102 174 WP_234340359.1 hypothetical protein [Streptomyces sp. TP-A0875] diamond 1314 124 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. TP-A0875
26687817 26687817 PRJNA1105232_S_NODE_6061_length_246_cov_1.055838_g5845_i0 PRJNA1105232 6061 246 1.055838 2.59736148 Collinsella sp. 1965294 Bacteria Bacteria 46.6 8.99e-4   NR MFR2030220.1 1965294 g5845 i0 41.3 0.975609756097561 80 38 86.6 3 12 224 18 97 MFR2030220.1 PD-(D/E)XK nuclease family protein [Collinsella sp.] diamond 240 46.6 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae Collinsella Collinsella sp.
26995474 26995474 PRJNA1105232_S_NODE_15522_length_168_cov_1.100840_g15306_i0 PRJNA1105232 15522 168 1.10084 1.8494112 Bacteria 2 Bacteria Bacteria 47.8 6.95e-5   NR WP_090938293.1 633440 g15306 i0 59.5 2.39285714285714 42 15 71.4 1 128 9 44 85 WP_090938293.1 C40 family peptidase [Nonomuraea jiangxiensis] diamond 402 48.1 0.993762993762994 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea jiangxiensis
27090664 27090664 PRJNA1105232_S_NODE_14662_length_171_cov_2.983607_g14446_i0 PRJNA1105232 14662 171 2.983607 5.10196797 Micrococcaceae 1268 Bacteria Bacteria 85.1 1.6e-17   NR WP_152221981.1 1663 g14446 i0 66.1 6.87719298245614 56 19 98.2 0 169 2 458 513 WP_152221981.1 MULTISPECIES: M20/M25/M40 family metallo-hydrolase [Arthrobacter] diamond 1176 85.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter  
27225556 27225556 PRJNA1105232_S_NODE_10083_length_201_cov_2.052632_g9867_i0 PRJNA1105232 10083 201 2.052632 4.12579032 Solirubrobacterales bacterium 1909295 Bacteria Bacteria 42.4 0.0284   NR HMC06220.1 1909295 g9867 i0 39.5 1.13432835820896 76 30 95.5 4 8 199 152 223 HMC06220.1 hypothetical protein [Solirubrobacterales bacterium] diamond 228 42.4 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
27257343 27257343 PRJNA1105232_S_NODE_13303_length_179_cov_1.200000_g13087_i0 PRJNA1105232 13303 179 1.2 2.148 Nocardioidaceae bacterium 1871072 Bacteria Bacteria 55.8 2.96e-7   NR QWC85067.1 1871072 g13087 i0 42.4 0.988826815642458 59 34 98.9 0 179 3 168 226 QWC85067.1 alpha/beta fold hydrolase [Nocardioidaceae bacterium] diamond 177 55.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae   Nocardioidaceae bacterium
28038264 28038264 PRJNA1105232_S_NODE_11205_length_192_cov_2.853147_g10989_i0 PRJNA1105232 11205 192 2.853147 5.47804224 Bacteria 2 Bacteria Bacteria 80.9 6.27e-16   NR WP_372727215.1 35761 g10989 i0 63.5 2.953125 63 23 98.4 0 190 2 294 356 WP_372727215.1 S8 family serine peptidase [Nocardioides sp.] diamond 567 81.3 0.995079950799508 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
28236006 28236006 PRJNA1105232_S_NODE_16466_length_165_cov_0.896552_g16250_i0 PRJNA1105232 16466 165 0.896552 1.4793108 Actinomycetes bacterium 1883427 Bacteria Bacteria 62 1.64e-9   NR MFP5347288.1 1883427 g16250 i0 64.3 0.763636363636364 42 15 76.4 0 131 6 245 286 MFP5347288.1 type I methionyl aminopeptidase [Actinomycetes bacterium] diamond 126 62 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
28330922 28330922 PRJNA1105232_S_NODE_8966_length_211_cov_1.234568_g8750_i0 PRJNA1105232 8966 211 1.234568 2.60493848 Rubrobacter taiwanensis 185139 Bacteria Bacteria 56.2 4.17e-7   NR WP_132692672.1 185139 g8750 i0 49.1 1.7914691943128 55 27 76.8 1 48 209 703 757 WP_132692672.1 penicillin acylase family protein [Rubrobacter taiwanensis] diamond 378 56.2 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter taiwanensis
29111796 29111796 PRJNA1105232_S_NODE_14588_length_172_cov_1.065041_g14372_i0 PRJNA1105232 14588 172 1.065041 1.83187052 Nonomuraea 83681 Bacteria Bacteria 43.1 0.0101   NR WP_138667990.1 103838 g14372 i0 42.5 2.18023255813953 40 23 69.8 0 21 140 141 180 WP_138667990.1 sensor histidine kinase [Nonomuraea turkmeniaca] diamond 375 43.5 0.990804597701149 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea turkmeniaca
29152298 29152298 PRJNA1105232_S_NODE_8829_length_212_cov_1.276074_g8613_i0 PRJNA1105232 8829 212 1.276074 2.70527688 Actinocatenispora rupis 519421 Bacteria Bacteria 43.9 0.00806   NR WP_203654927.1 519421 g8613 i0 36.4 0.933962264150943 66 42 93.4 0 211 14 102 167 WP_203654927.1 alpha/beta fold hydrolase [Actinocatenispora rupis] diamond 198 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinocatenispora Actinocatenispora rupis
29625060 29625060 PRJNA1105232_S_NODE_11250_length_192_cov_1.454545_g11034_i0 PRJNA1105232 11250 192 1.454545 2.7927264 Actinomadura madurae 1993 Bacteria Bacteria 42.7 0.0191   NR WP_308209988.1 1993 g11034 i0 42.6 0.734375 47 26 71.9 1 171 34 276 322 WP_308209988.1 GAF domain-containing protein [Actinomadura madurae] diamond 141 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura madurae
30572965 30572965 PRJNA1105232_S_NODE_9133_length_209_cov_2.412500_g8917_i0 PRJNA1105232 9133 209 2.4125 5.042125 Actinomycetes bacterium 1883427 Bacteria Bacteria 45.1 0.0036   NR MFL6239308.1 1883427 g8917 i0 50 0.688995215311005 48 21 64.6 1 10 144 231 278 MFL6239308.1 PIN-like domain-containing protein [Actinomycetes bacterium] diamond 144 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
30825951 30825951 PRJNA1105232_S_NODE_3794_length_295_cov_3.857724_g3578_i0 PRJNA1105232 3794 295 3.857724 11.3802858 Streptacidiphilus sp. BW17 3156274 Bacteria Bacteria 111 7.310000000000001e-27   NR WP_370104637.1 3156274 g3578 i0 47.4 1.9728813559322 97 51 98.6 0 291 1 227 323 WP_370104637.1 CobW family GTP-binding protein [Streptacidiphilus sp. BW17] diamond 582 111 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptacidiphilus Streptacidiphilus sp. BW17
31363441 31363441 PRJNA1105232_S_NODE_9536_length_206_cov_0.993631_g9320_i0 PRJNA1105232 9536 206 0.993631 2.04687986 Microbacterium sp. 51671 Bacteria Bacteria 114 6.199999999999998e-29   NR HVL61688.1 51671 g9320 i0 91.2 0.990291262135922 68 6 99 0 205 2 170 237 HVL61688.1 ROK family protein [Microbacterium sp.] diamond 204 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp.
31639132 31639132 PRJNA1105232_S_NODE_13116_length_180_cov_1.419847_g12900_i0 PRJNA1105232 13116 180 1.419847 2.5557246 Promicromonospora 43676 Bacteria Bacteria 65.1 1.77e-10   NR WP_189670240.1 2035533 g12900 i0 47.5 6.81666666666667 59 31 98.3 0 178 2 147 205 WP_189670240.1 trypsin-like serine peptidase [Promicromonospora soli] diamond 1227 65.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Promicromonospora Promicromonospora soli
31639133 31639133 PRJNA1105232_S_NODE_5496_length_255_cov_5.524272_g5280_i0 PRJNA1105232 5496 255 5.524272 14.0868936 Actinomycetes 1760 Bacteria Bacteria 132 2.4299999999999997e-37   NR WP_246342120.1 2724184 g5280 i0 71.8 4.52941176470588 78 22 91.8 0 6 239 73 150 WP_246342120.1 hypothetical protein [Streptomyces physcomitrii] diamond 1155 132 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces physcomitrii
31742708 31742708 PRJNA1105232_S_NODE_9297_length_208_cov_0.981132_g9081_i0 PRJNA1105232 9297 208 0.981132 2.04075456 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 93.6 2.71e-22   NR MCP3885490.1 2021380 g9081 i0 66.7 0.995192307692308 69 23 99.5 0 208 2 68 136 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 207 93.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
32059153 32059153 PRJNA1105232_S_NODE_11398_length_191_cov_1.485915_g11182_i0 PRJNA1105232 11398 191 1.485915 2.83809765 Nonomuraea gerenzanensis 93944 Bacteria Bacteria 41.6 0.0426   NR WP_225273038.1 93944 g11182 i0 40.4 0.895287958115183 57 31 89.5 1 9 179 157 210 WP_225273038.1 DUF998 domain-containing protein [Nonomuraea gerenzanensis] diamond 171 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea gerenzanensis
32208731 32208731 PRJNA1105232_S_NODE_6678_length_237_cov_1.053191_g6462_i0 PRJNA1105232 6678 237 1.053191 2.49606267 Ilumatobacter 682522 Bacteria Bacteria 71.2 3.18e-12   NR WP_133866998.1 467091 g6462 i0 50 2.70886075949367 74 35 92.4 2 222 4 261 333 WP_133866998.1 hypothetical protein [Ilumatobacter fluminis] diamond 642 71.2 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae Ilumatobacter Ilumatobacter fluminis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;