RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1104180" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1104180 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26774288 26774288 PRJNA1104180_P_NODE_22741_length_247_cov_0.885057_g22598_i0 PRJNA1104180 22741 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 107 5.39e-26   NR WP_013705920.1 60893 g22598 i0 65.8 3.86234817813765 79 27 96 0 6 242 87 165 WP_013705920.1 HPr kinase [Desulfobacca acetoxidans] diamond 954 107 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobaccia Desulfobaccales Desulfobaccaceae Desulfobacca Desulfobacca acetoxidans
28710053 28710053 PRJNA1104180_P_NODE_20447_length_251_cov_0.865169_g20304_i0 PRJNA1104180 20447 251 0.865169 2.17157419 Desulfobacterales bacterium 2044940 Bacteria Bacteria 99 6.87e-22   NR MBN1931790.1 2044940 g20304 i0 56.6 2.97609561752988 83 36 99.2 0 3 251 518 600 MBN1931790.1 ATP-binding protein [Desulfobacterales bacterium] diamond 747 99 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
30004603 30004603 PRJNA1104180_P_NODE_25731_length_242_cov_0.911243_g25588_i0 PRJNA1104180 25731 242 0.911243 2.20520806 Desulfotignum balticum 115781 Bacteria Bacteria 48.5 5.45e-5   NR WP_024336686.1 115781 g25588 i0 63.9 0.446280991735537 36 13 44.6 0 10 117 39 74 WP_024336686.1 helix-turn-helix transcriptional regulator [Desulfotignum balticum] diamond 108 48.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfotignum Desulfotignum balticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;