RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA1104180" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1104180 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27225553 27225553 PRJNA1104180_P_NODE_12903_length_290_cov_0.894009_g12761_i0 PRJNA1104180 12903 290 0.894009 2.5926261 Aedes albopictus 7160 Arthropoda Arthropoda 44.7 0.0138   NR XP_062698618.1 7160 g12761 i0 42.5 0.413793103448276 40 22 40.3 1 130 14 700 739 XP_062698618.1 uncharacterized protein LOC109412847 [Aedes albopictus] diamond 120 44.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Culicidae Aedes Aedes albopictus
28132970 28132970 PRJNA1104180_P_NODE_13485_length_286_cov_1.460094_g13343_i0 PRJNA1104180 13485 286 1.460094 4.17586884 Aphididae 27482 Arthropoda Arthropoda 92.8 1.5700000000000001e-19   NR XP_029341341.1 7029 g13343 i0 60 2.72727272727273 75 30 78.7 0 272 48 84 158 XP_029341341.1 aminopeptidase N [Acyrthosiphon pisum] diamond 780 92.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Aphididae Acyrthosiphon Acyrthosiphon pisum
32407322 32407322 PRJNA1104180_P_NODE_20919_length_250_cov_0.870056_g20776_i0 PRJNA1104180 20919 250 0.870056 2.17514 Penaeus vannamei 6689 Arthropoda Arthropoda 76.3 1.67e-14   NR XP_069985543.1 6689 g20776 i0 66.7 1.944 54 18 64.8 0 170 9 86 139 XP_069985543.1 craniofacial development protein 2-like [Penaeus vannamei] diamond 486 76.3 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Penaeidae Penaeus Penaeus vannamei
32691286 32691286 PRJNA1104180_P_NODE_18640_length_258_cov_1.248649_g18498_i0 PRJNA1104180 18640 258 1.248649 3.22151442 Mileewa gaoligongana 2545677 Arthropoda Arthropoda 44.7 0.00868   NR XII34339.1 2545677 g18498 i0 50 1.01162790697674 40 20 46.5 0 104 223 141 180 XII34339.1 NADH dehydrogenase subunit 2 [Mileewa gaoligongana] diamond 261 44.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Cicadellidae Mileewa Mileewa gaoligongana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;