RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA1104180" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 1 ✖

bioproject 1

  • PRJNA1104180 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27099248 27099248 PRJNA1104180_P_NODE_24642_length_244_cov_0.900585_g24499_i0 PRJNA1104180 24642 244 0.900585 2.1974274 Coccomyxa viridis 1274662 Plants Plants 76.3 5.28e-14   NR CAK0759285.1 1274662 g24499 i0 58.1 3.03688524590164 62 25 75 1 242 60 297 358 CAK0759285.1 hypothetical protein CVIRNUC_002686 [Coccomyxa viridis] diamond 741 76.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;