RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1104180" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1104180 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28267673 28267673 PRJNA1104180_P_NODE_23546_length_245_cov_2.034884_g23403_i0 PRJNA1104180 23546 245 2.034884 4.9854658 candidate division SR1 bacterium 2044938 Bacteria Bacteria 160 9.26e-48   NR MBB1543570.1 2044938 g23403 i0 97.5 0.991836734693878 81 2 99.2 0 244 2 32 112 MBB1543570.1 hypothetical protein [candidate division SR1 bacterium] diamond 243 160 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
28480213 28480213 PRJNA1104180_P_NODE_25806_length_242_cov_0.911243_g25663_i0 PRJNA1104180 25806 242 0.911243 2.20520806 Candidatus Nanoperiomorbus 2171988 Bacteria Bacteria 154 2.8599999999999998e-46   NR MCG5079684.1 2026720 g25663 i0 97.5 2.96280991735537 79 2 97.9 0 2 238 63 141 MCG5079684.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 717 155 0.993548387096774 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
29878282 29878282 PRJNA1104180_P_NODE_17631_length_263_cov_1.621053_g17489_i0 PRJNA1104180 17631 263 1.621053 4.26336939 Candidatus Nanosyncoccus nanoralicus 2171996 Bacteria Bacteria 160 3.32e-47   NR WP_129604602.1 2171996 g17489 i0 98.8 0.96958174904943 85 1 97 0 1 255 175 259 WP_129604602.1 hypothetical protein [Candidatus Nanosyncoccus nanoralicus] diamond 255 160 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanosyncoccales Candidatus Nanosyncoccaceae Candidatus Nanosyncoccus Candidatus Nanosyncoccus nanoralicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;