RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA1103784" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1103784 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27857306 27857306 PRJNA1103784_P_NODE_4505_length_272_cov_1.281407_g4450_i0 PRJNA1103784 4505 272 1.281407 3.48542704 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 83.2 1.23e-16   NR XP_004352561.1 1257118 g4450 i0 43.8 0.981617647058823 89 50 98.2 0 268 2 212 300 XP_004352561.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff] diamond 267 83.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31647746 31647746 PRJNA1103784_P_NODE_3877_length_285_cov_2.344340_g3822_i0 PRJNA1103784 3877 285 2.34434 6.681369 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 105 1.14e-26   NR XP_004348720.1 1257118 g3822 i0 58.5 0.863157894736842 82 34 86.3 0 10 255 47 128 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 246 105 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;