RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA1103784" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1103784 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28394068 28394068 PRJNA1103784_P_NODE_8086_length_228_cov_3.019355_g8031_i0 PRJNA1103784 8086 228 3.019355 6.8841294 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 77 5.01e-16   NR MES1912234.1 1215613 g8031 i0 54.9 1.86842105263158 71 29 93.4 2 214 2 48 115 MES1912234.1 hypothetical protein [Cercozoa sp. M6MM] diamond 426 77 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
29909896 29909896 PRJNA1103784_P_NODE_8171_length_215_cov_5.007042_g8116_i0 PRJNA1103784 8171 215 5.007042 10.7651403 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.06e-16   NR MES1912234.1 1215613 g8116 i0 57.1 1.95348837209302 70 27 97.7 2 4 213 51 117 MES1912234.1 hypothetical protein [Cercozoa sp. M6MM] diamond 420 78.6 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31806081 31806081 PRJNA1103784_P_NODE_4717_length_267_cov_3.170103_g4662_i0 PRJNA1103784 4717 267 3.170103 8.46417501 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 72.8 3.95e-14   NR MES1912234.1 1215613 g4662 i0 49.4 1.73033707865169 77 36 86.5 2 7 237 46 119 MES1912234.1 hypothetical protein [Cercozoa sp. M6MM] diamond 462 72.8 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;