RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA1103784" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA1103784 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9139756 9139756 PRJNA1103784_P_NODE_5448_length_254_cov_1.331492_g5393_i0 PRJNA1103784 5448 254 1.331492 3.38198968 Trebouxiophyceae 75966 Plants Plants 142 2.9399999999999996e-37   NR KAL4858421.1 3077 g5393 i0 77.4 10.3228346456693 84 19 99.2 0 253 2 76 159 KAL4858421.1 40S ribosomal protein S4 [Chlorella vulgaris] diamond 2622 142 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
14240902 14240902 PRJNA1103784_P_NODE_1952_length_374_cov_5.063123_g1897_i0 PRJNA1103784 1952 374 5.063123 18.93608002 Eukaryota 2759 Plants Plants 178 2.22e-53   NR CAD7703417.1 121088 g1897 i0 75.7 2.70320855614973 115 27 92.2 1 374 30 144 257 CAD7703417.1 unnamed protein product [Ostreobium quekettii] diamond 1011 179 0.994413407821229 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
22697156 22697156 PRJNA1103784_P_NODE_6638_length_246_cov_1.329480_g6583_i0 PRJNA1103784 6638 246 1.32948 3.2705208 Eukaryota 2759 Plants Plants 132 1.4199999999999998e-37   NR XP_001697388.1 3055 g6583 i0 85.5 213.170731707317 76 11 92.7 0 245 18 78 153 XP_001697388.1 ribosomal protein S14 [Chlamydomonas reinhardtii] diamond 52440 133 0.992481203007519 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
26941009 26941009 PRJNA1103784_P_NODE_1982_length_373_cov_0.946667_g1927_i0 PRJNA1103784 1982 373 0.946667 3.53106791 Chlamydomonas eustigma 1157962 Plants Plants 168 2.83e-50   NR GAX77325.1 1157962 g1927 i0 68.3 2.96782841823056 123 39 98.9 0 369 1 82 204 GAX77325.1 hypothetical protein CEUSTIGMA_g4771.t1 [Chlamydomonas eustigma] diamond 1107 168 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
27659431 27659431 PRJNA1103784_P_NODE_2964_length_316_cov_2.020576_g2909_i0 PRJNA1103784 2964 316 2.020576 6.38502016 root 1 Root_unresolved Root_unresolved 136 1.79e-35   NR GAX80193.1 1157962 g2909 i0 74 3.90189873417722 77 19 73.1 1 233 3 181 256 GAX80193.1 hypothetical protein CEUSTIGMA_g7631.t1 [Chlamydomonas eustigma] diamond 1233 136 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
27699838 27699838 PRJNA1103784_P_NODE_5484_length_253_cov_1.711111_g5429_i0 PRJNA1103784 5484 253 1.711111 4.32911083 Symbiochloris irregularis 706552 Plants Plants 56.6 5.08e-7   NR KAK9806054.1 706552 g5429 i0 54.4 1.43478260869565 57 25 66.4 1 184 17 288 344 KAK9806054.1 hypothetical protein WJX73_009471 [Symbiochloris irregularis] diamond 363 56.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris irregularis
28362445 28362445 PRJNA1103784_P_NODE_3766_length_288_cov_1.246512_g3711_i0 PRJNA1103784 3766 288 1.246512 3.58995456 Bryopsis sp. KO-2 3115439 Plants Plants 131 4.72e-33   NR GMH35311.1 3041901 g3711 i0 64.9 0.979166666666667 94 33 97.9 0 287 6 377 470 GMH35311.1 hypothetical protein BSKO_03179 [Bryopsis sp. KO-2023] diamond 282 131 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
30532868 30532868 PRJNA1103784_P_NODE_6353_length_248_cov_0.880000_g6298_i0 PRJNA1103784 6353 248 0.88 2.1824 Chlorella 3071 Plants Plants 117 2.17e-28   NR PRW51008.1 3076 g6298 i0 68.3 7.93548387096774 82 26 99.2 0 2 247 446 527 PRW51008.1 eukaryotic translation elongation factor 1 alpha 2 [Chlorella sorokiniana] diamond 1968 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
30541597 30541597 PRJNA1103784_P_NODE_4653_length_269_cov_1.362245_g4598_i0 PRJNA1103784 4653 269 1.362245 3.66443905 Auxenochlorella protothecoides 3075 Plants Plants 45.1 0.00804   NR XP_011399984.1 3075 g4598 i0 31.8 1.96282527881041 88 56 98.1 1 266 3 849 932 XP_011399984.1 Importin-5 [Auxenochlorella protothecoides] diamond 528 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;