RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA1102048" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1102048 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27225510 27225510 PRJNA1102048_P_NODE_10283_length_275_cov_1.450495_g10179_i0 PRJNA1102048 10283 275 1.450495 3.98886125 Nitrososphaerota archaeon 2026795 Archaea Archaea 77.8 2.27e-14   NR MDA4134408.1 2026795 g10179 i0 50 6.04363636363636 64 32 69.8 0 197 6 35 98 MDA4134408.1 spherulation-specific family 4 protein [Nitrososphaerota archaeon] diamond 1662 77.8 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
28362418 28362418 PRJNA1102048_P_NODE_11566_length_261_cov_1.638298_g11462_i0 PRJNA1102048 11566 261 1.638298 4.27595778 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 72 1.37e-12   NR HEX6294714.1 2169593 g11462 i0 49.2 0.67816091954023 59 28 65.5 1 90 260 5 63 HEX6294714.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 177 72 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
29499133 29499133 PRJNA1102048_P_NODE_17670_length_241_cov_0.916667_g17566_i0 PRJNA1102048 17670 241 0.916667 2.20916747 Nitrosopumilus maritimus 338192 Archaea Archaea 139 3.86e-37   NR WP_012216065.1 338192 g17566 i0 84.8 0.983402489626556 79 12 98.3 0 3 239 277 355 WP_012216065.1 Cdc6/Cdc18 family protein [Nitrosopumilus maritimus] diamond 237 139 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus maritimus
29719966 29719966 PRJNA1102048_P_NODE_5170_length_377_cov_2.414474_g5066_i0 PRJNA1102048 5170 377 2.414474 9.10256698 Nitrososphaerota archaeon 2026795 Archaea Archaea 60.5 9.01e-8   NR MDG7045045.1 2026795 g5066 i0 39 1.59151193633952 100 53 75.6 4 80 364 262 358 MDG7045045.1 hypothetical protein [Nitrososphaerota archaeon] diamond 600 60.5 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
32502380 32502380 PRJNA1102048_P_NODE_10479_length_273_cov_1.360000_g10375_i0 PRJNA1102048 10479 273 1.36 3.7128 Nitrosotalea sp. 2833567 Archaea Archaea 103 1.2099999999999999e-23   NR HEU5488938.1 2833567 g10375 i0 64.3 2.2967032967033 70 25 76.9 0 210 1 35 104 HEU5488938.1 spherulation-specific family 4 protein [Nitrosotalea sp.] diamond 627 103 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;